Skip to another splice site:
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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATAACACTTCCGATTCTAATTAGGGTTTATCGTTTGCATCGCTCTTGCCACTACCTCCGGAGTCTGTTTCATTTGTTTAAGgtgagtgaccacattgattttagaatgattatatatgtatggtttgaattcttgcttacctcttgttagctaaggttttatcttaaccattaatttagtaatataggattcttgttttcaaacag

Basic information

species Arabidopsis thaliana
transcript AT4G00695.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116417756|gb|EG460348.1|EG460348
EST:     GTTTGCATCGCTCTTGCCACTACCTCCGGAGTCTGTTTCATTTGTTTAAG                         TGAATGGAGGAATTAAGCCAAATCTTGAAGAACAATAGGACCGATGATCTC
genomic: GTTTGCATCGCTCTTGCCACTACCTCCGGAGTCTGTTTCATTTGTTTAAGgtgagtgacc ... tttcaaacagTGAATGGAGGAATTAAGCCAAATCTTGAAGAACAATAGGACCGATGATCTC
EST: gi|116417784|gb|EG460376.1|EG460376
EST:     GTTTGCATCGCTCTTGCCACTACCTCCGGAGTCTGTTTCATTTGTTTAAG                         TGAATGGAGGAATTAAGCCAAATCTTGAAGAACAATAGGACCGATGATCTC
genomic: GTTTGCATCGCTCTTGCCACTACCTCCGGAGTCTGTTTCATTTGTTTAAGgtgagtgacc ... tttcaaacagTGAATGGAGGAATTAAGCCAAATCTTGAAGAACAATAGGACCGATGATCTC
EST: gi|116417755|gb|EG460347.1|EG460347
EST:     GTTTGCATCGCTCTTGCCACTACCTCCGGAGTCTGTTTCATTTGTTTAAG                         TGAATGGAGGAATTAAGCCAAATCTTGAAGAACAATAGGACCGATGATCTC
genomic: GTTTGCATCGCTCTTGCCACTACCTCCGGAGTCTGTTTCATTTGTTTAAGgtgagtgacc ... tttcaaacagTGAATGGAGGAATTAAGCCAAATCTTGAAGAACAATAGGACCGATGATCTC
EST: gi|116417773|gb|EG460365.1|EG460365
EST:     GTTTGCATCGCTCTTGCCACTACCTCCGGAGTCTGTTTCATTTGTTTAAG                         TGAATGGAGGAATTAAGCCAAATCTTGAAGAACAATAGGACCGATGATCTC
genomic: GTTTGCATCGCTCTTGCCACTACCTCCGGAGTCTGTTTCATTTGTTTAAGgtgagtgacc ... tttcaaacagTGAATGGAGGAATTAAGCCAAATCTTGAAGAACAATAGGACCGATGATCTC
EST: gi|116417760|gb|EG460352.1|EG460352
EST:     GTTTGCATCGCTCTTGCCACTACCTCCGGAGTCTGTTTCATTTGTTTAAG                         TGAATGGAGGAATTAAGCCAAATCTTGAAGAACAATAGGACCGATGATCTC
genomic: GTTTGCATCGCTCTTGCCACTACCTCCGGAGTCTGTTTCATTTGTTTAAGgtgagtgacc ... tttcaaacagTGAATGGAGGAATTAAGCCAAATCTTGAAGAACAATAGGACCGATGATCTC
EST: gi|116417758|gb|EG460350.1|EG460350
EST:     TTTGCATCGCTCTTGCCACTACCTCCGGAGTCTGTTTCATTTGTTTAAG                         TGAATGGAGGAATTAAGCCAAATCTTGAAGAACAATAGGACCGATGATCTC
genomic: TTTGCATCGCTCTTGCCACTACCTCCGGAGTCTGTTTCATTTGTTTAAGgtgagtgacc ... tttcaaacagTGAATGGAGGAATTAAGCCAAATCTTGAAGAACAATAGGACCGATGATCTC
EST: gi|116417774|gb|EG460366.1|EG460366
EST:     GTTTGCATCGCTCTTGCCACTACCTCCGGAGTCTGTTTCATTTGTTTAAG                         TGAATGGAGGAATTAAGCCAAATCTTGAAGAACAATAGGACCGATGATCTC
genomic: GTTTGCATCGCTCTTGCCACTACCTCCGGAGTCTGTTTCATTTGTTTAAGgtgagtgacc ... tttcaaacagTGAATGGAGGAATTAAGCCAAATCTTGAAGAACAATAGGACCGATGATCTC
EST: gi|116417785|gb|EG460377.1|EG460377
EST:     GTTTGCATCGCTCTTGCCACTACCTCCGGAGTCTGTTTCATTTGTTTAAG                         TGAATGGAGGAATTAAGCCAAATCTTGAAGAACAATAGGACCGATGATCTC
genomic: GTTTGCATCGCTCTTGCCACTACCTCCGGAGTCTGTTTCATTTGTTTAAGgtgagtgacc ... tttcaaacagTGAATGGAGGAATTAAGCCAAATCTTGAAGAACAATAGGACCGATGATCTC
EST: gi|116417757|gb|EG460349.1|EG460349
EST:     TTTGCATCGCTCTTGCCACTACCTCCGGAGTCTGTTTCATTTGTTTAAG                         TGAATGGAGGAATTAAGCCAAATCTTGAAGAACAATAGGACCGATGATCTC
genomic: TTTGCATCGCTCTTGCCACTACCTCCGGAGTCTGTTTCATTTGTTTAAGgtgagtgacc ... tttcaaacagTGAATGGAGGAATTAAGCCAAATCTTGAAGAACAATAGGACCGATGATCTC
EST: gi|116417754|gb|EG460346.1|EG460346
EST:     GTTTGCATCGCTCTTGCCACTACCTCCGGAGTCTGTTTCATTTGTTTAAG                         TGAATGGAGGAATTAAGCCAAATCTTGAAGAACAATAGGACCGATGATCTC
genomic: GTTTGCATCGCTCTTGCCACTACCTCCGGAGTCTGTTTCATTTGTTTAAGgtgagtgacc ... tttcaaacagTGAATGGAGGAATTAAGCCAAATCTTGAAGAACAATAGGACCGATGATCTC