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 5'  3'   		2  
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGCCATAACTCGTTTCGCTCACCCTCTTAACTCTTTAGAACAAGTAGAAGAAGTCTCATCTTCTTCGTCTTCTTTGCGATCCTTCTGATTTCACTAAGgtaagccgatttctgatcaccggttcgccggaatcattctatttcaattctcacttgttgaattttgtaataatttttaaatgttagggaggctagggttgacatcattttgattctatgtcactgatatcgatctggctatcttcattgtcgaattag

Basic information

species Arabidopsis thaliana
transcript AT4G00585.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164144747|gb|ES156858.1|ES156858
EST:     GCGATCCTTCTGATTTCACTAAAG                         GAAAAGGAATCAGTTTTTGGTGGAAGTAATTGATCCGATCTAGGAAAAAT
genomic: GCGATCCTTCTGATTTCACT-AAGgtaagccgat ... gtcgaattagGAAAAGGAATCAGTTTTTGGTGGAAGTAATTGATCCGATCTAGGAAAAAT
EST: gi|86019329|gb|DR315075.1|DR315075
EST:     GTCTTCTTTGCGATCCTTCTGATTTCACTAAG                         GAAAAGGAATCAGTTTTTGGTGGAAGTAATTGATCCGATCTAGGAAAAATG
genomic: GTCTTCTTTGCGATCCTTCTGATTTCACTAAGgtaagccgat ... gtcgaattagGAAAAGGAATCAGTTTTTGGTGGAAGTAATTGATCCGATCTAGGAAAAATG
EST: gi|125192312|gb|EL207266.1|EL207266
EST:     GCGATCCTTCTGATCTCACTAAG                         GAAAAGGAATCAGTTTTTGGTGGAAGTAATTGATCCGATCTAGGAAAAATG
genomic: GCGATCCTTCTGATTTCACTAAGgtaagccgat ... gtcgaattagGAAAAGGAATCAGTTTTTGGTGGAAGTAATTGATCCGATCTAGGAAAAATG
EST: gi|125129994|gb|EL173453.1|EL173453
EST:     GCGATCCTTCTGATTTCACTAAG                         GAAAAGGAATCAGTTTTTGGTGGAAGTAATTGATCCGATCTAGGAAAAATG
genomic: GCGATCCTTCTGATTTCACTAAGgtaagccgat ... gtcgaattagGAAAAGGAATCAGTTTTTGGTGGAAGTAATTGATCCGATCTAGGAAAAATG
EST: gi|116460112|gb|EG502704.1|EG502704
EST:     AGAAGTCTCATCTTCTTCGTCTTCTTTGCGATCCTTCTGATTTCACTAAG                         GAAAAGGAATCAGTTTTTGGTGGAAGTAATTGATCCGATCTAGGAAAAATG
genomic: AGAAGTCTCATCTTCTTCGTCTTCTTTGCGATCCTTCTGATTTCACTAAGgtaagccgat ... gtcgaattagGAAAAGGAATCAGTTTTTGGTGGAAGTAATTGATCCGATCTAGGAAAAATG
EST: gi|116460119|gb|EG502711.1|EG502711
EST:     ATCTTCTTCGTCTTCTTTGCGATCCTTCTGATTTCACTAAG                         GAAAAGGAATCAGTTTTTGGTGGAAGTAATTGATCCGATCTAGGAAAAATG
genomic: ATCTTCTTCGTCTTCTTTGCGATCCTTCTGATTTCACTAAGgtaagccgat ... gtcgaattagGAAAAGGAATCAGTTTTTGGTGGAAGTAATTGATCCGATCTAGGAAAAATG
EST: gi|86019333|gb|DR315079.1|DR315079
EST:     AGAAGTCTCATCTTCTTCGTCTTCTTTGCGATCCTTCTGATTTCACTAAG                         GAAAAGGAATCAGTTTTTGGTGGAAGTAATTGATCCGATCTAGGAAAAATG
genomic: AGAAGTCTCATCTTCTTCGTCTTCTTTGCGATCCTTCTGATTTCACTAAGgtaagccgat ... gtcgaattagGAAAAGGAATCAGTTTTTGGTGGAAGTAATTGATCCGATCTAGGAAAAATG
EST: gi|86019332|gb|DR315078.1|DR315078
EST:     ATCTTCTTCGTCTTCTTTGCGATCCTTCTGATTTCACTAAG                         GAAAAGGAATCAGTTTTTGGTGGAAGTAATTGATCCGATCTAGGAAAAATG
genomic: ATCTTCTTCGTCTTCTTTGCGATCCTTCTGATTTCACTAAGgtaagccgat ... gtcgaattagGAAAAGGAATCAGTTTTTGGTGGAAGTAATTGATCCGATCTAGGAAAAATG
EST: gi|86019335|gb|DR315081.1|DR315081
EST:     AGAAGTCTCATCTTCTTCGTCTTCTTTGCGATCCTTCTGATTTCACTAAG                         GAAAAGGAATCAGTTTTTGGTGGAAGTAATTGATCCGATCTAGGAAAAATG
genomic: AGAAGTCTCATCTTCTTCGTCTTCTTTGCGATCCTTCTGATTTCACTAAGgtaagccgat ... gtcgaattagGAAAAGGAATCAGTTTTTGGTGGAAGTAATTGATCCGATCTAGGAAAAATG
EST: gi|116460120|gb|EG502712.1|EG502712
EST:     ATCTTCTTCGTCTTCTTTGCGATCCTTCTGATTTCACTAAG                         GAAAAGGAATCAGTTTTTGGTGGAAGTAATTGATCCGATCTAGGAAAAATG
genomic: ATCTTCTTCGTCTTCTTTGCGATCCTTCTGATTTCACTAAGgtaagccgat ... gtcgaattagGAAAAGGAATCAGTTTTTGGTGGAAGTAATTGATCCGATCTAGGAAAAATG
EST: gi|116460124|gb|EG502716.1|EG502716
EST:     GTCTTCTTTGCGATCCTTCTGATTTCACTAAG                         GAAAAGGAATCAGTTTTTGGTGGAAGTAATTGATCCGATCTAGGAAAAATG
genomic: GTCTTCTTTGCGATCCTTCTGATTTCACTAAGgtaagccgat ... gtcgaattagGAAAAGGAATCAGTTTTTGGTGGAAGTAATTGATCCGATCTAGGAAAAATG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AATGCCATAACTCGTTTCGCTCACCCTCTTAACTCTTTAGAACAAGTAGAAGAAGTCTCATCTTCTTCGTCTTCTTTGCGATCCTTCTGATTTCACTAAGgtaagccgatttctgatcaccggttcgccggaatcattctatttcaattctcacttgttgaattttgtaataatttttaaatgttagggaggctagggttgacatcattttgattctatgtcactgatatcgatctggctatcttcattgtcgaattag

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