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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGTTCTTAAAGACATCTTCCCTCTTCCTCAGACACAGCTTCTTCTACTGGAGAAGAGGAGGAGAACACAAATCCAATTCACACTGGAAACgtaagaagaagcgatcaaagcttaaacttctctttgactcatcattgttgttctctctgttttatttttcttctcaatttcttgtttgaacttgtgaaaatcattgaattgcaattgtgtag

Basic information

species Arabidopsis thaliana
transcript AT4G00570.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124858556|gb|EH942993.1|EH942993
EST:     GGAGAAGAGGAGGAGAACACAAATCCAATTCACACTGGAAAC                         TGTTGGGTCGGATCCTGAGCGATATTTCGAGACCG
genomic: GGAGAAGAGGAGGAGAACACAAATCCAATTCACACTGGAAACgtaagaagaa ... aattgtgtagTGTTGGGTCGGATCCTGAGTGATATTTCGAGACCG
EST: gi|125277333|gb|EL291418.1|EL291418
EST:     GAAGAGGAGGAGAACACAAATCCAATTCACACTGGAAAC                         TGTTGGGTCGGATCCTGAGTGATATTTCGAGACCG
genomic: GAAGAGGAGGAGAACACAAATCCAATTCACACTGGAAACgtaagaagaa ... aattgtgtagTGTTGGGTCGGATCCTGAGTGATATTTCGAGACCG
EST: gi|152034212|gb|BP822115.2|BP822115
EST:     CTTCTACTGGAGAAGAGGAGGAGAACACAAATCCAATTCACACTGGAAAC                         TGTTGGGTCGGATCCTGAGTGATATTTCGAGACCGATGATGTGGAAGAACA
genomic: CTTCTACTGGAGAAGAGGAGGAGAACACAAATCCAATTCACACTGGAAACgtaagaagaa ... aattgtgtagTGTTGGGTCGGATCCTGAGTGATATTTCGAGACCGATGATGTGGAAGAACA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCTGTTCTTAAAGACATCTTCCCTCTTCCTCAGACACAGCTTCTTCTACTGGAGAAGAGGAGGAGAACACAAATCCAATTCACACTGGAAACgtaagaagaagcgatcaaagcttaaacttctctttgactcatcattgttgttctctctgttttatttttcttctcaatttcttgtttgaacttgtgaaaatcattgaattgcaattgtgtag

- - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - -  AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAA