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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGAAACGGATCTGGATCCGAGGAATTCGCCCTTGGTCTTATTGCCGGCGGCCTTGTCGACGGAAATATAGATCTATGGAATCCTCTTTCTTTGATCGGgtgcgtttcctttcctcgccttgctttgctgctattgaatcgccattttcactctgtttttttttataatccgcattaatagagttatgtatgtggtatccaattttcatctgaacgagtctaactcgaacaactgtcacaattttcag

Basic information

species Arabidopsis thaliana
transcript AT3G63460.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G63460.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv13s0158g00140.t01 (Vitis vinifera), 5'ss of exon 1
GAAGAAACGGATCTGGATCCGAGGAATTCGCCCTTGGTCTTATTGCCGGCGGCCTTGTCGACGGAAATATAGATCTATGGAATCCTCTTTCTTTGATCGGgtgcgtttcctttcctcgccttgctttgctgctattgaatcgccattttcactctgtttttttttataatccgcattaatagagttatgtatgtggtatccaattttcatctgaacgagtctaactcgaacaactgtcacaattttcag
| |  |||||||| || |||||||||||||| ||||| |||||||| || || || |||||||| ||||| ||| | ||||||||||||    ||||| |||  |  |  | |  |  | ||| |||  || | |||||| |   |  |      ||  ||||||| || |    |   |    ||  | || ||| |  |    ||                                          
GCAAGAACGGATCGGGGTCCGAGGAATTCGCGCTTGGGCTTATTGCTGGTGGGCTCGTCGACGGCAATATTGATGTTTGGAATCCTCTTAAGCTGATCCGgtaaggattgtgttgttactttgttttattgat-ttgaattggtgtgat------gtacttttttacaa-cgaattcggtttgattcggaatttggaaatcgtggttt-----------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116440744|gb|EG483336.1|EG483336
EST:     GGCCTTGTCGACGGAAATATAGATCTATGGAATCCTCTTTCTTTGATCGG                         TTCCCAGCCCAGCGAAAATGCACTCGTTGGCCATCTTTCAGTTCACAAAGG
genomic: GGCCTTGTCGACGGAAATATAGATCTATGGAATCCTCTTTCTTTGATCGGgtgcgtttcc ... caattttcagTTCCCAGCCCAGCGAAAATGCACTCGTTGGCCATCTTTCAGTTCACAAAGG