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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAATGTCCGCCGGAGAACAGTACTAGTGTTAGTAGCCAGTTCTCGTTCGCTGCCTCGGCCACTTCACAGCTTGTTCTTGAGCGCATAATGTCTCAATCGgtacggttacatagttatggaccgaccgacacactctgtttttgtatcttgatgatgagtttattctgttttgaaaaatgaag

Basic information

species Arabidopsis thaliana
transcript AT3G63300.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G63300.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA02G16330.1 (Glycine max), 5'ss of exon 1
AGAATGTCCGCCGGAGAACAGTACTAGTGTTAGTAGCCAGTTCTCGTTCGCTGCCTCGGCCACTTCACAGCTTGTTCTTGAGCGCATAATGTCTCAATC---------Ggtacggttacatagtt----atg---gaccgaccgacacactctgtttttgtatcttgatgatgagtttattctgttttgaaaaatgaag-----------
            |||   |   || |    | | | ||||||||| || ||| |||| ||||| ||||| ||||| ||||| ||||||||||| || ||         |||| |  | ||   ||    |||    |  | |   || ||  ||||| | |      |  || |  || || |||| |      ||  |           
---------AGAGGAATTCTCAACCATGTGTGGCAACCAGTTCTCTTTTGCTTCCTCTGCCACCTCACAACTTGTCCTTGACCGCATAATGTCACAGTCCGCAAGAGAGgtaggtcttcactcttcaccatgccaaattgcctctcataccatgtttctctcatacaaaaatcacatt-ttttgttgttgttgttgttgtttcttagaga

upper sequence: AT3G63300.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA10G03500.1 (Glycine max), 5'ss of exon 1
AGAATGTCCGCCGGAGAACAGTACTAGTGTTAGTAGCCAGTTCTCGTTCGCTGCCTCGGCCACTTCACAGCTTGTTCTTGAGCGCATAATGTCTCAATCGgtacggttacatagttatggaccgaccgacacactctgtttttgtatcttgatgatgagtttattctgttttgaaaaatgaag-------------------------------
            |||   |   || |    | | | ||||||||| || ||| |||| ||||| ||||||||||| ||||| ||||| ||||| || || |    |  |  ||| | |  |||    | |||| |   || |  ||   ||   |||  || |   |  |||  ||||| | |                               
---------AGAGGAATTCTCAACCATGTGTGGCAACCAGTTCTCTTTTGCTTCCTCTGCCACCTCACAGCTTGTCCTTGACCGCATTATGTCACAGTCCGC-TAGAGAGgtaggtcttcacca--tgtcacattgc-ttctcatactatgtgcatgt-ttgaaaatcctttacaaaattatgtttgaggcaaaagtaattttgttaatggatc