1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TTTAATTAGTTTCTTCTGTGCGATAGAGATCGATCGAGAGATGGGTGCTTCATCATCATCATCTGTGTCGGAGAAATCAATCCATCAATTCACCGTCAAGgttttctaatttatgaatcccttttcttcattgtttgtttatctgatgaatgaatgcgtttctgacttgtttgtctgatctatcggaaattag
species | Arabidopsis thaliana |
transcript | AT3G63080.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CATCATCATCATCTGTGTCGGAGAAATCAATCCATCAATTCACCGTCAAG GATAGCTCCGGCAAGGAGGTTGACCTAAGCGTGTATCAAGGGAAAGTGCTGEST: gi|116467795|gb|EG510387.1|EG510387
genomic: CATCATCATCATCTGTGTCGGAGAAATCAATCCATCAATTCACCGTCAAGgttttctaat ... cggaaattagGATAGCTCCGGCAAGGAGGTTGACCTAAGCGTGTATCAAGGGAAAGTGCTG
EST: CATCATCATCATCTGTGTCGGAGAAATCAATCCATCAATTCACCGTCAAG GATAGCTCCGGCAAGGAGGTTGACCTAAGCGTGTATCAAGGGAAAGTGCTGEST: gi|19875832|gb|AU236663.1|AU236663
genomic: CATCATCATCATCTGTGTCGGAGAAATCAATCCATCAATTCACCGTCAAGgttttctaat ... cggaaattagGATAGCTCCGGCAAGGAGGTTGACCTAAGCGTGTATCAAGGGAAAGTGCTG
EST: CATCATCATCATCTGTGTCGGAGAAATCAATCCATCAATTCACCGTCAAG GATAGCTCCGGCAAGGAGGTTGACCTAAGCGTGTATCAAGGGAAAGTGCTGEST: gi|116473167|gb|EG515759.1|EG515759
genomic: CATCATCATCATCTGTGTCGGAGAAATCAATCCATCAATTCACCGTCAAGgttttctaat ... cggaaattagGATAGCTCCGGCAAGGAGGTTGACCTAAGCGTGTATCAAGGGAAAGTGCTG
EST: CATCATCATCATCTGTGTCGGAGAAATCAATCCATCAATTCACCGTCAAG GATAGCTCCGGCAAGGAGGTTGACCTAAGCGTGTATCAAGGGAAAGTGCTG
genomic: CATCATCATCATCTGTGTCGGAGAAATCAATCCATCAATTCACCGTCAAGgttttctaat ... cggaaattagGATAGCTCCGGCAAGGAGGTTGACCTAAGCGTGTATCAAGGGAAAGTGCTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTAATTAGTTTCTTCTGTGCGATAGAGATCGATCGAGAGATGGGTGCTTCATCATCATCATCTGTGTCGGAGAAATCAATCCATCAATTCACCGTCAAGgttttctaatttatgaatcccttttcttcattgtttgtttatctgatgaatgaatgcgtttctgacttgtttgtctgatctatcggaaattag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA