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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATCTGCCGAAATGGGTCTGCCAAAACTGTCACCACTCCCTTACCATCGTCGGCGTCGATTCCTACGCCGGCAAGTTCTTCAACGATCCCCCTCCGTCCGgttagccccttcttcctccctctcgttcccttttttggaattcatgtttggtaattgcgttcttgttcatcatagatagatagagttcaattgttgattt...

Basic information

species Arabidopsis thaliana
transcript AT3G61710.3
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G61710.3 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA04G26840.1 (Glycine max), 5'ss of exon 1
AATCTGCCGAAATGGGTCTGCCAAAACTGTCACCACTCCCTTACCATCGTCGGCGTCGATTCCTACGCCGGCAAGTTCTTCAACGATCCCCCTCCGTCCGgttagccccttcttcctccctctcgttcccttttttggaattcatgtttggtaattgcgttcttgttcatcatagatagatagagttcaattg---ttgattt
||| | ||   |||||| ||||| ||||| | | || | ||   |||||| |||| |||||| ||||||| ||||||||||||||||||  |||  | ||||| |       ||| |   | || ||   ||  ||  | |   || ||| || |||  |  ||||| ||  |    |  || | |    |||   |||||| 
AATGTTCCCCGATGGGTTTGCCAGAACTGCCGCAACCCTCTCTGCATCGTAGGCGCCGATTCTTACGCCGACAAGTTCTTCAACGATCCTTCTCGCTACGgttcgttagggtttcattattatcatttg-ttaattaaattaattgattgatacttgt-tgtttgttgattttgctgatttataatgttgttgcatttgatt-

upper sequence: AT3G61710.3 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA11G21490.1 (Glycine max), 5'ss of exon 1
AATCTGCCGAAATGGGTCTGCCAAAACTGTCACCACTCCCTTACCATCGTCGGCGTCGATTCCTACGCCGGCAAGTTCTTCAACGATCCCCCTCCGTCCGgttagccccttcttcctccctctcgttcccttttttggaattcat-gtttggtaattgcgttcttgttcatcatagatagatagagttcaattgttgattt-
||  ||||   |||||| ||||| ||||| | | || | ||   ||||||||||| |||||| ||||||| ||| ||||||||||||||  |||  ||||||  |       ||| |   | || ||   |  |||  |||| || | ||| || |||  |  |  ||   |  |  |    ||  |       | ||||  
AACGTGCCCCGATGGGTTTGCCAGAACTGCCGCAACCCTCTCTGCATCGTCGGCGCCGATTCTTACGCCGACAAATTCTTCAACGATCCTTCTCGCTCCGgtccgttagggtttcattattatcatttgttaattt--aattaattgattgatacttgtttgttgatttggctgattttttgaggttgttgcattcgattga

upper sequence: AT3G61710.3 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv15s0046g00950.t01 (Vitis vinifera), 5'ss of exon 1
AATCTGCCGAAATGGGTCTGCCAAAACTGTCACCACTCCCTTACCATCGTCGGCGTCGATTCCTACGCCGGCAAGTTCTTCAACGATCCCCCTCCGTCCGgttagccccttcttcctccctctcgttcccttttttggaattcatgtttggtaattgcgttcttgttcatcatagatagatagagttcaattg---ttgattt---
| |||||||| |||||||||||| ||||| | ||||  |||   ||||||||||||||| |||||||||| |||||||| |  |||  || |||  || ||||||       ||| ||  | |  |||  | ||  | | ||  | ||| ||| ||| | | || |   |  | ||    | |   | || ||    ||| ||   
ACTCTGCCGAGATGGGTCTGCCAGAACTGCCGCCACAACCTATGCATCGTCGGCGTCGACTCCTACGCCGACAAGTTCTACTCCGACTCCTCTCGCTCTGgttagggt----ttcatcttttttattcg-tcttcagtatttttttttttgtatttgtggtttt-tcgttgctggaattgtggttctgaactgagtctgagttact

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86069208|gb|DR364965.1|DR364965
EST:     CGGCGTCGATTCCTACGCCGGCAAGTTCTTCAACGATCCCCCTCCGTCCGCTACGCAG                  
genomic: CGGCGTCGATTCCTACGCCGGCAAGTTCTTCAACGAT--CCC-CC-TCCG-T-C-C-Ggttagcccct ... agc