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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTCCGGCTGATGTCACGAAAGACGTTGCAGAGGAGAAAATTCAAAACCCACCTCCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGAgtaagttaatttctcttaacgcatgtaattatggattctgttctctgataatcttctgctttgacgaggaaatattggttttggggttaacttggttctg...

Basic information

species Arabidopsis thaliana
transcript AT3G61260.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124898139|gb|EH974353.1|EH974353
EST:     ACCTCCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGA                         AACCTGTAGAAG
genomic: ACCTCCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGAgtaagttaat ... ttttttacagAACCTGTAGAAG
EST: gi|116446100|gb|EG488692.1|EG488692
EST:     ACCTCCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGA                         AACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATA
genomic: ACCTCCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGAgtaagttaat ... ttttttacagAACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATA
EST: gi|125061438|gb|EL130077.1|EL130077
EST:     GCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGA                         AACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGT
genomic: GCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGAgtaagttaat ... ttttttacagAACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGT
EST: gi|125299302|gb|EL313387.1|EL313387
EST:     CCAAAGCCCTTACTGTTGTTGAGAA                         AACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGAT
genomic: CCAAAGCCCTTACTGTTGTTGAG-Agtaagttaat ... ttttttacagAACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGAT
EST: gi|124781998|gb|EH871941.1|EH871941
EST:     GACTCCAAAGCCCTTACTGTTGTTGAGA                         AACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATA
genomic: GACTCCAAAGCCCTTACTGTTGTTGAGAgtaagttaat ... ttttttacagAACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATA
EST: gi|124826103|gb|EH910969.1|EH910969
EST:     CCCTTACTGTTGTTGAGA                         AACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATA
genomic: CCCTTACTGTTGTTGAGAgtaagttaat ... ttttttacagAACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATA
EST: gi|124836872|gb|EH921311.1|EH921311
EST:     GCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGA                         AACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTACTAGCATCGCTCGA
genomic: GCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGAgtaagttaat ... ttttttacagAACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGT-CT-GCATCGCTCGA
EST: gi|125192610|gb|EL207564.1|EL207564
EST:     ACCTCCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGA                         AACCTGTAGAAGAGCCTGCACCGGCGAAA
genomic: ACCTCCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGAgtaagttaat ... ttttttacagAACCTGTAGAAGAGCCTGCACCGGCGAAA
EST: gi|86080975|gb|DR376732.1|DR376732
EST:     ACCTCCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGA                         AACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATA
genomic: ACCTCCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGAgtaagttaat ... ttttttacagAACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATA
EST: gi|116446101|gb|EG488693.1|EG488693
EST:     ACCTCCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGA                         AACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATA
genomic: ACCTCCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGAgtaagttaat ... ttttttacagAACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATA
EST: gi|125257843|gb|EL271928.1|EL271928
EST:     CCTCCGGAGCAAATTTTCGTATGACTCCAAAGCCCTTACTGTTGTTGAGA                         AACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCG
genomic: CCTCCGGAGCAAATTTTCG-ATGACTCCAAAGCCCTTACTGTTGTTGAGAgtaagttaat ... ttttttacagAACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCG
EST: gi|125070065|gb|EL135616.1|EL135616
EST:     ACCTCCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGA                         AACCTGTAGAAGAGCCTGCACCGGCGAAA
genomic: ACCTCCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGAgtaagttaat ... ttttttacagAACCTGTAGAAGAGCCTGCACCGGCGAAA
EST: gi|125042092|gb|EL114361.1|EL114361
EST:     CCAAAGCCCTTACTGTTGTTGAGA                         AACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATA
genomic: CCAAAGCCCTTACTGTTGTTGAGAgtaagttaat ... ttttttacagAACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATA
EST: gi|116446103|gb|EG488695.1|EG488695
EST:     ACCTCCGGGGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGA                         AACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATA
genomic: ACCTCCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGAgtaagttaat ... ttttttacagAACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATA
EST: gi|124775990|gb|EH866117.1|EH866117
EST:     ACCTCCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGA                         AACCTGTAGAAGAGCCTGCA
genomic: ACCTCCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGAgtaagttaat ... ttttttacagAACCTGTAGAAGAGCCTGCA
EST: gi|124737429|gb|EH828831.1|EH828831
EST:     CCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGA                         AACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATA
genomic: CCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGAgtaagttaat ... ttttttacagAACCTGTAGAAGAGCCTGCACCGGCGAAACCTGCGTCTGCATCGCTCGATA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACTCCGGCTGATGTCACGAAAGACGTTGCAGAGGAGAAAATTCAAAACCCACCTCCGGAGCAAATTTTCGATGACTCCAAAGCCCTTACTGTTGTTGAGAgtaagttaatttctcttaacgcatgtaattatggattctgttctctgataatcttctgctttgacgaggaaatattggttttggggttaacttggttctg

- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttctctt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttctgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaggaaa