Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATTTTTCATTCTTCTAAGCCCTAGCTCAAAGCTTTCTCTCTCAAATCCGCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcgtgtgacctttaatcaacctgctgggtttcttcgcttagtgtctttcttctttattctgatttgctatctgggcgattgtgttacgattcacttactgtgaatttaatcgttgtgtgtttttcag

Basic information

species Arabidopsis thaliana
transcript AT3G60820.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G60820.3 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA08G39420.1 (Glycine max), 5'ss of exon 1
CCATTTTTCATTCTTCTAAGCCCTAGCTCAAAGCTTTCTCTCTCAAATCCGCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcgtgtgacctttaatcaacctgctgggtttcttcgcttagtgtctttcttctttattctgatttgctatctgggcgattgtgttacgattcacttactgtgaatttaatcgttgtgtgtttttcag
   || | | ||||  |    |   | ||    ||  |||||    || | ||||||| ||||| || || || |||||||||||||||||||| |||||||| || |    |  |  |   || | || ||       |  |  || | |     || || ||||  ||| | |   | |    || | ||    |||  ||  |||                          
TTCTTCTCCGTTCTCTTCTCTCTCTGTTCTTCACTCACTCTCATTCATTCACCATGACGAAACAACATGCCAATTGGTCTCCTTACGATAACAACGGAGGgtaaggttaccctttctctc--tctatct-ctaaaagagtatg--tattattcaattttttcattc--attcgtttatttgttttttattttc---ttcgttttttgtag------------------------

upper sequence: AT3G60820.3 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA08G39420.4 (Glycine max), 5'ss of exon 1
CCATTTTTCATTCTTCTAAGCCCTAGCTCAAAGCTTTCTCTCTCAAATCCGCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcgtgtgacctttaatcaacctgctgggtttcttcgcttagtgtctttcttctttattctgatttgctatctgggcgattgtgttacgattcacttactgtgaatttaatcgttgtgtgtttttcag
      | | ||||  |    |   | ||    ||  |||||    || | ||||||| ||||| || || || |||||||||||||||||||| |||||||| || |    |  |  |   || | || ||       |  |  || | |     || || ||||  ||| | |   | |    || | ||    |||  ||  |||                          
-----CTCCGTTCTCTTCTCTCTCTGTTCTTCACTCACTCTCATTCATTCACCATGACGAAACAACATGCCAATTGGTCTCCTTACGATAACAACGGAGGGTAAGgttaccctttctctc--tctatct-ctaaaagagtatg--tattattcaattttttcattc--attcgtttatttgttttttattttc---ttcgttttttgtag------------------------

upper sequence: AT3G60820.3 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv15s0048g00900.t01 (Vitis vinifera), 5'ss of exon 1
-----CCATTTTTCATTCTTCTAAGCCCTAGCTCAAAGCTTTCTCTCTCAAATCCGCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcgtgtgacctttaatcaacctgctgggtttcttcgct-tagtgtctttcttctttattctgatttgctatctgggcgattgtgttacgattcacttactgtgaatttaatcgttgtgtgtttttcag
     ||     ||| |   |||| | ||  |||   ||| ||||| |  | | | | ||||| || ||||| || ||||||||||||||||| |||||||||||||||      | | | ||||   |   ||   |  ||| | |  | || ||| | | |   ||| |    | || ||| | |  | |||  | | |||    ||   ||||  |   |  |||            
TCTCCCCTCAGCTCAGTGCCCTAATCTCT--CTC---GCTGTCTCTTTTCATTTCACAATGACGAAGCAGCAAGCTAACTGGTCTCCTTACGACAACAATGGAGGgtactctctttctaaacttt---ctctctctagactttatcccttataatgtatatatcgattaattgattgtgatat-tcgatggttgaatgatgatgttgttttcgtgatatatgtatttgcag---------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86020247|gb|DR315993.1|DR315993
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020231|gb|DR315977.1|DR315977
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020240|gb|DR315986.1|DR315986
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGGATCGGATTACTGTGTTATCGCCGCCGATA
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCT-GGATCGGATTACTGTGTTATCGCCGCCGATA
EST: gi|86020259|gb|DR316005.1|DR316005
EST:     GSSATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020241|gb|DR315987.1|DR315987
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020260|gb|DR316006.1|DR316006
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020257|gb|DR316003.1|DR316003
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020271|gb|DR316017.1|DR316017
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020242|gb|DR315988.1|DR315988
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020253|gb|DR315999.1|DR315999
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020227|gb|DR315973.1|DR315973
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020263|gb|DR316009.1|DR316009
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020238|gb|DR315984.1|DR315984
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020249|gb|DR315995.1|DR315995
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020270|gb|DR316016.1|DR316016
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020258|gb|DR316004.1|DR316004
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020267|gb|DR316013.1|DR316013
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020229|gb|DR315975.1|DR315975
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020239|gb|DR315985.1|DR315985
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020248|gb|DR315994.1|DR315994
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020243|gb|DR315989.1|DR315989
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020234|gb|DR315980.1|DR315980
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020251|gb|DR315997.1|DR315997
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTA
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTA
EST: gi|86020262|gb|DR316008.1|DR316008
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTAGGCCATCGCTGGATNGGATTACTGTGTTATCGCCGCCGATA
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGT-GGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATA
EST: gi|86020255|gb|DR316001.1|DR316001
EST:     CATGACTAAAACAGCACCGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: CATGACT-AAACAGCA-CGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|116445800|gb|EG488392.1|EG488392
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020245|gb|DR315991.1|DR315991
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020236|gb|DR315982.1|DR315982
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020244|gb|DR315990.1|DR315990
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020237|gb|DR315983.1|DR315983
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCC
EST: gi|86020254|gb|DR316000.1|DR316000
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020230|gb|DR315976.1|DR315976
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020246|gb|DR315992.1|DR315992
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020264|gb|DR316010.1|DR316010
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86023568|gb|DR319321.1|DR319321
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCSTTACGATAACAATGGAGG                         AACATGTGTGG
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGG
EST: gi|86020265|gb|DR316011.1|DR316011
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020269|gb|DR316015.1|DR316015
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020261|gb|DR316007.1|DR316007
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020266|gb|DR316012.1|DR316012
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020233|gb|DR315979.1|DR315979
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020235|gb|DR315981.1|DR315981
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|163981458|gb|ES118944.1|ES118944
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AAACATGTGTGGCCA
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAA-CATGTGTGGCCA
EST: gi|86023567|gb|DR319320.1|DR319320
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020256|gb|DR316002.1|DR316002
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020232|gb|DR315978.1|DR315978
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020268|gb|DR316014.1|DR316014
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020228|gb|DR315974.1|DR315974
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
EST: gi|86020252|gb|DR315998.1|DR315998
EST:     GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGG                         AACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC
genomic: GCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcg ... tgtttttcagAACATGTGTGGCCATCGCTGGATCGGATTACTGTGTTATCGCCGCCGATAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCATTTTTCATTCTTCTAAGCCCTAGCTCAAAGCTTTCTCTCTCAAATCCGCCATGACTAAACAGCACGCGAACTGGTCTCCTTACGATAACAATGGAGGgtacggatcgtgtgacctttaatcaacctgctgggtttcttcgcttagtgtctttcttctttattctgatttgctatctgggcgattgtgttacgattcacttactgtgaatttaatcgttgtgtgtttttcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG