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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTTATTGGTTCAACCGTGACCGATTCGTTCTATCTGCTGGACATGGATGTATGTTGCTCTACGCGTTGCTTCATCTTGCCGGCTACGACAGCGTCCAGgtctgtgatctcttctctgtttaattgctttcgatctgatcgtaattgatgaatgtagtaactttagtggatagattgaatctgttttgatattcatctgatggctgcttgaagtagattcactgaaaaggtgtttggatttgtttattaggag

Basic information

species Arabidopsis thaliana
transcript AT3G60750.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G60750.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA10G43990.1 (Glycine max), 5'ss of exon 1
CCCTTATTGGTTCAACCGTGACCGATTCGTTCTATCTGCTGGACATGGATGTATGTTGCTCTACGCGTTGCTTCATCTTGCCGGCTACGACAGCGTCCAGgtctgtgatctcttctctgtttaattgctttcgatctgatcgtaattgatgaatgtagtaactttagtggatagattgaatctgttttgatattcatctgatggctgcttgaagtagattcactgaaaaggtgtttggatttgtttattaggag
|||   |||||||||||||||||| |||||||| |||||||||||||| || ||| | |  || ||  | ||||| ||||| ||||| ||||  || |||||| ||  |  ||||| | ||| |||  |||| |  |  ||   ||||      | ||| |||        |       || |  || ||  || || | |  ||    |                                            
CCCCGCTTGGTTCAACCGTGACCGTTTCGTTCTCTCTGCTGGACATGGCTGCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAGgtcagtttttacttctttttttcatt--tttctactt--tcactattg------ggagtgactcggaactgtgatcctcatgtcgttagaatttaatttaagtgcattgt--------------------------------------------

upper sequence: AT3G60750.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA20G38720.1 (Glycine max), 5'ss of exon 1
CCCTTATTGGTTCAACCGTGACCGATTCGTTCTATCTGCTGGACATGGATGTATGTTGCTCTACGCGTTGCTTCATCTTGCCGGCTACGACAGCGTCCAGgtctgtgatctcttctctgtttaattgctttcgatctgatcgtaattgatgaatgtagtaactttagtggatagattgaatctgttttgatattcatctgatggctgcttgaagtagattcactgaaaaggtgtttggatttgtttattaggag
 ||   |||||||||||||||||| ||| |||| |||||||||||||| || ||| | |  || ||  | ||||| ||||| ||||| ||||| || | |||| |   |  ||||||   ||  ||  |||   |    |    ||||      | | | | |||  |   |   |   |    || ||||  |||||   |      ||                                            
TCCCACTTGGTTCAACCGTGACCGTTTCATTCTCTCTGCTGGACATGGCTGCATGCTCCAATATGCTCTCCTTCACCTTGCAGGCTATGACAGTGTTCTGgtcagcttttacttctcc--ttgtttcttttttgtacttttactattg------ggattcattttgatctgtgactcaga---attctgatcctcatcccgttagaattta-------------------------------------------

upper sequence: AT3G60750.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv15s0048g00370.t01 (Vitis vinifera), 5'ss of exon 1
CCCTTATTGGTTCAACCGTGACCGATTCGTTCTATCTGCTGGACATGGATGTATGTTGCTCTACGCGTTGCTTCATCTTGCCGGCTACGACAGCGTCCAGgtctgtg-atctctt---ctctgtttaattgctttcgatctgatcgtaattga---tgaatgtagtaactttagtggatagattgaatctgttttgatattcatctgatggctgcttgaagtagattcactgaaaaggtgtttggatttgtttattaggag
||| || |||||||| ||||| || || ||||| ||||| ||||||||||| ||| | |  |||||  ||||||| ||||| ||||||||||| |||  ||| |||| || || |   || | |||    |||| |  ||||   ||  | |    |  |||| ||      |  | |   ||  ||  ||  |   | ||                                                            
CCCCTACTGGTTCAATCGTGATCGCTTTGTTCTCTCTGCCGGACATGGATGCATGCTTCAGTACGCTCTGCTTCACCTTGCTGGCTACGACAGTGTCAGGgtttgtgcatttccttaactttctttgggagcttgc--tctgtatgtgttcggatctttatgtggttttgccaaagtacgaatcaaaaatggatctctgttt-----------------------------------------------------------

upper sequence: AT3G60750.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv16s0022g01440.t01 (Vitis vinifera), 5'ss of exon 1
CCCTTATTGGTTCAACCGTGACCGATTCGTTCTATCTGCTGGACATGGATGTATGTTGCTCTACGCGTTGCTTCATCTTGCCGGCTACGACAGCGTCCAGgtctgtgatctcttctctgtttaattgctttcgatctga--tcgtaattgatgaatgtagtaactttagtggatagattgaatctg--ttttgatattcatctgatggctgcttgaagtagattcactgaaaaggtgtttggatttgtttattaggag
||| || |||||||| ||||| ||||||||||| || ||||| || || ||||||||||  || || || ||||||||||| ||||| ||||| ||  ||||   |  | | ||  | ||  | ||  |||  || |    |  ||||   |  || |  ||  ||| ||  || |  |    | |  ||| |  |  ||                                                          
CCCCTACTGGTTCAATCGTGATCGATTCGTTCTCTCCGCTGGCCACGGCTGTATGTTGCAGTATGCTTTACTTCATCTTGCTGGCTATGACAGTGTTAAGgtgaattttttatttccagtgcattttttttaaatgtatatttttaatctttttattttttatttttggtatatgggctttgccagagtttagcaaaaca----------------------------------------------------------