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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTTATTGGTTCAACCGTGACCGATTCGTTCTATCTGCTGGACATGGATGTATGTTGCTCTACGCGTTGCTTCATCTTGCCGGCTACGACAGCGTCCAGgtctgtgatctcttctctgtttaattgctttcgatctgatcgtaattgatgaatgtagtaactttagtggatagattgaatctgttttgatattcatctgatggctgcttgaagtagattcactgaaaaggtgtttggatttgtttattag

Basic information

species Arabidopsis thaliana
transcript AT3G60750.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G60750.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA10G43990.1 (Glycine max), 5'ss of exon 1
CCCTTATTGGTTCAACCGTGACCGATTCGTTCTATCTGCTGGACATGGATGTATGTTGCTCTACGCGTTGCTTCATCTTGCCGGCTACGACAGCGTCCAGgtctgtgatctcttctctgtttaattgctttcgatctgatcgtaattgatgaatgtagtaactttagtggatagattgaatctgttttgatattcatctgatggctgcttgaagtagattcactgaaaaggtgtttggatttgtttattag
|||   |||||||||||||||||| |||||||| |||||||||||||| || ||| | |  || ||  | ||||| ||||| ||||| ||||  || |||||| ||  |  ||||| | ||| |||  |||| |  |  ||   ||||      | ||| |||        |       || |  || ||  || || | |  ||    |                                         
CCCCGCTTGGTTCAACCGTGACCGTTTCGTTCTCTCTGCTGGACATGGCTGCATGCTCCAATATGCTCTCCTTCACCTTGCTGGCTATGACACTGTTCAGgtcagtttttacttctttttttcatt--tttctactt--tcactattg------ggagtgactcggaactgtgatcctcatgtcgttagaatttaatttaagtgcattgt-----------------------------------------

upper sequence: AT3G60750.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA20G38720.1 (Glycine max), 5'ss of exon 1
CCCTTATTGGTTCAACCGTGACCGATTCGTTCTATCTGCTGGACATGGATGTATGTTGCTCTACGCGTTGCTTCATCTTGCCGGCTACGACAGCGTCCAGgtctgtgatctcttctctgtttaattgctttcgatctgatcgtaattgatgaatgtagtaactttagtggatagattgaatctgttttgatattcatctgatggctgcttgaagtagattcactgaaaaggtgtttggatttgtttattag
 ||   |||||||||||||||||| ||| |||| |||||||||||||| || ||| | |  || ||  | ||||| ||||| ||||| ||||| || | |||| |   |  ||||||   ||  ||  |||   |    |    ||||      | | | | |||  |   |   |   |    || ||||  |||||   |      ||                                         
TCCCACTTGGTTCAACCGTGACCGTTTCATTCTCTCTGCTGGACATGGCTGCATGCTCCAATATGCTCTCCTTCACCTTGCAGGCTATGACAGTGTTCTGgtcagcttttacttctcc--ttgtttcttttttgtacttttactattg------ggattcattttgatctgtgactcaga---attctgatcctcatcccgttagaattta----------------------------------------

upper sequence: AT3G60750.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv15s0048g00370.t01 (Vitis vinifera), 5'ss of exon 1
CCCTTATTGGTTCAACCGTGACCGATTCGTTCTATCTGCTGGACATGGATGTATGTTGCTCTACGCGTTGCTTCATCTTGCCGGCTACGACAGCGTCCAGgtctgtg-atctctt---ctctgtttaattgctttcgatctgatcgtaattga---tgaatgtagtaactttagtggatagattgaatctgttttgatattcatctgatggctgcttgaagtagattcactgaaaaggtgtttggatttgtttattag
||| || |||||||| ||||| || || ||||| ||||| ||||||||||| ||| | |  |||||  ||||||| ||||| ||||||||||| |||  ||| |||| || || |   || | |||    |||| |  ||||   ||  | |    |  |||| ||      |  | |   ||  ||  ||  |   | ||                                                         
CCCCTACTGGTTCAATCGTGATCGCTTTGTTCTCTCTGCCGGACATGGATGCATGCTTCAGTACGCTCTGCTTCACCTTGCTGGCTACGACAGTGTCAGGgtttgtgcatttccttaactttctttgggagcttgc--tctgtatgtgttcggatctttatgtggttttgccaaagtacgaatcaaaaatggatctctgttt--------------------------------------------------------

upper sequence: AT3G60750.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv16s0022g01440.t01 (Vitis vinifera), 5'ss of exon 1
CCCTTATTGGTTCAACCGTGACCGATTCGTTCTATCTGCTGGACATGGATGTATGTTGCTCTACGCGTTGCTTCATCTTGCCGGCTACGACAGCGTCCAGgtctgtgatctcttctctgtttaattgctttcgatctga--tcgtaattgatgaatgtagtaactttagtggatagattgaatctg--ttttgatattcatctgatggctgcttgaagtagattcactgaaaaggtgtttggatttgtttattag
||| || |||||||| ||||| ||||||||||| || ||||| || || ||||||||||  || || || ||||||||||| ||||| ||||| ||  ||||   |  | | ||  | ||  | ||  |||  || |    |  ||||   |  || |  ||  ||| ||  || |  |    | |  ||| |  |  ||                                                       
CCCCTACTGGTTCAATCGTGATCGATTCGTTCTCTCCGCTGGCCACGGCTGTATGTTGCAGTATGCTTTACTTCATCTTGCTGGCTATGACAGTGTTAAGgtgaattttttatttccagtgcattttttttaaatgtatatttttaatctttttattttttatttttggtatatgggctttgccagagtttagcaaaaca-------------------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124951090|gb|EL026493.1|EL026493
EST:     GTATGTTGCTCTACGCGTTGCTCCATCTTGCCGGCTACGACAGCGTCCAG                         GAGGAAGATTTGAAGCAGTTCCG
genomic: GTATGTTGCTCTACGCGTTGCTTCATCTTGCCGGCTACGACAGCGTCCAGgtctgtgatc ... tgtttattagGAGGAAGATTTGAAGCAGTTCCG
EST: gi|124709204|gb|EH800606.1|EH800606
EST:     GTATGTTGCTCTACGCGTTGCTTCATCTTGCCGGCTACGACAGCGTCCAG                         GAGGAAGATTTGAAGCAGTTCCGTCAATGGGGAA
genomic: GTATGTTGCTCTACGCGTTGCTTCATCTTGCCGGCTACGACAGCGTCCAGgtctgtgatc ... tgtttattagGAGGAAGATTTGAAGCAGTTCCGTCAATGGGGAA
EST: gi|124747581|gb|EH837711.1|EH837711
EST:     GTATGTTGCTCTACGCGTTGCTTCATCTTGCCGGCTACGACAGCGTCCAG                         GAGGAAGATTTGAAGCAGTT
genomic: GTATGTTGCTCTACGCGTTGCTTCATCTTGCCGGCTACGACAGCGTCCAGgtctgtgatc ... tgtttattagGAGGAAGATTTGAAGCAGTT
EST: gi|124723519|gb|EH814921.1|EH814921
EST:     TATGTTGCTCTACGCGTTGCTTCATCTTGCCGGCTAACGACAGCGTCCAG                         GAGGAAGATTTG
genomic: TATGTTGCTCTACGCGTTGCTTCATCTTGCCGGCTA-CGACAGCGTCCAGgtctgtgatc ... tgtttattagGAGGAAGATTTG