1 5' 3' | 2 5' 3' | 3 5' 3' |
TCTTCCTTCAAGTCCTTTTTATTTCTCTACCAACCTCGAAAACGAATCAAGAGATTAGCATCTTATCGAGATTTAAACCATCAATTAATCGGCTGCCATGgtgggtttcctcctcctctcttcgttttttccaaatttttaattgtttcttgccgctttaatctcttgagtgatgactcttttatcatttggtaaatcaa...
species | Arabidopsis thaliana |
transcript | AT3G59280.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAGATTAGCATCTTATCGAGATTTAAACCATCAATTAATCGGCTGCCATG GCTGGGAGACTACTTGCAAATTTGATTGTGATGGGTTCTGGGATCATTGGTEST: gi|152038381|gb|AV821341.2|AV821341
genomic: GAGATTAGCATCTTATCGAGATTTAAACCATCAATTAATCGGCTGCCATGgtgggtttcc ... ctttttacagGCTGGGAGACTACTTGCAAATTTGATTGTGATGGGTTCTGGGATCATTGGT
EST: GAGATTAGCATCTTATCGAGATTTAAACCATCAATTAATCGGCTGCCATG GCTGGGAGACTACTTGCAAATTTGATTGTGATGGGTTCTGGGATCATTGGTEST: gi|86084307|gb|DR380066.1|DR380066
genomic: GAGATTAGCATCTTATCGAGATTTAAACCATCAATTAATCGGCTGCCATGgtgggtttcc ... ctttttacagGCTGGGAGACTACTTGCAAATTTGATTGTGATGGGTTCTGGGATCATTGGT
EST: GAGATTAGCATCTTATCGAGATTTAAACCATCAATTAATCGGCTGCCATG GCTGGGAGACTTACTTGCAAATTTGATTGTGATGGGTTCTGGGATCATTGGEST: gi|116454644|gb|EG497236.1|EG497236
genomic: GAGATTAGCATCTTATCGAGATTTAAACCATCAATTAATCGGCTGCCATGgtgggtttcc ... ctttttacagGCTGGGAGAC-TACTTGCAAATTTGATTGTGATGGGTTCTGGGATCATTGG
EST: GAGATTAGCATCTTATCGAGATTTAAACCATCAATTAATCGGCTGCCATG GCTGGGAGACTACTTGCAAATTTGATTGTGATGGGTTCTGGGATCATTGGT
genomic: GAGATTAGCATCTTATCGAGATTTAAACCATCAATTAATCGGCTGCCATGgtgggtttcc ... ctttttacagGCTGGGAGACTACTTGCAAATTTGATTGTGATGGGTTCTGGGATCATTGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTCCTTCAAGTCCTTTTTATTTCTCTACCAACCTCGAAAACGAATCAAGAGATTAGCATCTTATCGAGATTTAAACCATCAATTAATCGGCTGCCATGgtgggtttcctcctcctctcttcgttttttccaaatttttaattgtttcttgccgctttaatctcttgagtgatgactcttttatcatttggtaaatcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcctctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcttgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctttta