1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATCCTGAAGTCTAAAATCCAGCTTTTGAACCAGACGAACATGGTTGATTACGCCATGGATATTCACAAGAGTCTCTACCACACTGAAGACGCTCCTCAAGgtattcttgtgtattcctctctggatatgtctgtgaatttgcgtttttgtgtactggtttgtttgtttgatgatgaatgttgaaatttgtggtgatag
species | Arabidopsis thaliana |
transcript | AT3G57290.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGCCATGGATATTCACAAGAGTCTCTACCAAACTGAAGACGCTCCTCAAG AAATGGTGGAGAGAAGAAAAGAGGTTGTCGCCTAGGCTCAAATCTTTGGAGEST: gi|86078869|gb|DR374626.1|DR374626
genomic: CGCCATGGATATTCACAAGAGTCTCTACCACACTGAAGACGCTCCTCAAGgtattcttgt ... gtggtgatagAAATGGTGGAGAGAAGAACAGAGGTTGTCGC-TAGGCTCAAATCTTTGGAG
EST: AGAGTCTCTACCACACTGAAGACGCTCCTCAAAG AAATGGTGGAGAGAAGMACAGAGKTTGYCGCTAGGCTCAAATCTTTGGAGEST: gi|116459587|gb|EG502179.1|EG502179
genomic: AGAGTCTCTACCACACTGAAGACGCTCCTC-AAGgtattcttgt ... gtggtgatagAAATGGTGGAGAGAAGAACAGAGGTTGTCGCTAGGCTCAAATCTTTGGAG
EST: CGCCATGGATATTCACAAGAGTCTCTACCACACTGAAGACGCTCCTCAAG AAATGGTGGAGAGAAGAACAGAGGTTGTCGCTAGGCTCAAATCTTTGGAGGEST: gi|116459578|gb|EG502170.1|EG502170
genomic: CGCCATGGATATTCACAAGAGTCTCTACCACACTGAAGACGCTCCTCAAGgtattcttgt ... gtggtgatagAAATGGTGGAGAGAAGAACAGAGGTTGTCGCTAGGCTCAAATCTTTGGAGG
EST: CGCCATGGACATTCACAAGAGTCTCTACCACACTGAAGACGCTCCTCAAG AAATGGTGGAGAGAAGAACAGAGGTTGTCGCTAGGCTCAAATCTTTGGAGG
genomic: CGCCATGGATATTCACAAGAGTCTCTACCACACTGAAGACGCTCCTCAAGgtattcttgt ... gtggtgatagAAATGGTGGAGAGAAGAACAGAGGTTGTCGCTAGGCTCAAATCTTTGGAGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCCTGAAGTCTAAAATCCAGCTTTTGAACCAGACGAACATGGTTGATTACGCCATGGATATTCACAAGAGTCTCTACCACACTGAAGACGCTCCTCAAGgtattcttgtgtattcctctctggatatgtctgtgaatttgcgtttttgtgtactggtttgtttgtttgatgatgaatgttgaaatttgtggtgatag
- - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC