Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TATTTCGCAAATATTAGGGTTCCTGCACTCTTCTTCTTCCCTGTCGCCGCATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttctccttctttgttagattcatagtttagaacacagaatcaagctcacagtgattttgaaagcgaaattgtgtattgaattcgagtttgctttttattgcag

Basic information

species Arabidopsis thaliana
transcript AT3G56340.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86017121|gb|DR312867.1|DR312867
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017108|gb|DR312854.1|DR312854
EST:     ATCAAAGAGAACTGAAGCTATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017115|gb|DR312861.1|DR312861
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017144|gb|DR312890.1|DR312890
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017138|gb|DR312884.1|DR312884
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017097|gb|DR312843.1|DR312843
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017140|gb|DR312886.1|DR312886
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017117|gb|DR312863.1|DR312863
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017142|gb|DR312888.1|DR312888
EST:     ATCAAAGAGAACTGAAGCTATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|116478543|gb|EG521135.1|EG521135
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017123|gb|DR312869.1|DR312869
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017120|gb|DR312866.1|DR312866
EST:     ATCAAAGAGAACTGAAGCTATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|116475477|gb|EG518069.1|EG518069
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|152034061|gb|BP866502.2|BP866502
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCG-GGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017129|gb|DR312875.1|DR312875
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017139|gb|DR312885.1|DR312885
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGTAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017109|gb|DR312855.1|DR312855
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017148|gb|DR312894.1|DR312894
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017096|gb|DR312842.1|DR312842
EST:     ATCAAAGAGAACTGAAGCTATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|47831534|gb|CK121218.1|CK121218
EST:     GAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: GAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017150|gb|DR312896.1|DR312896
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|47829422|gb|CK119106.1|CK119106
EST:     AACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: AACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86076083|gb|DR371840.1|DR371840
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017124|gb|DR312870.1|DR312870
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|164182570|gb|ES047445.1|ES047445
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAAGGGTGGCAGGAACAAGCATAACCGT
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGT
EST: gi|86017132|gb|DR312878.1|DR312878
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017130|gb|DR312876.1|DR312876
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017110|gb|DR312856.1|DR312856
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86081497|gb|DR377254.1|DR377254
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|47830238|gb|CK119922.1|CK119922
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|47829771|gb|CK119455.1|CK119455
EST:     CAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: CAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017125|gb|DR312871.1|DR312871
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|116469688|gb|EG512280.1|EG512280
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017099|gb|DR312845.1|DR312845
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|152038413|gb|AV822242.2|AV822242
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017128|gb|DR312874.1|DR312874
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|116445932|gb|EG488524.1|EG488524
EST:     TTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: TTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017116|gb|DR312862.1|DR312862
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017145|gb|DR312891.1|DR312891
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATT                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017137|gb|DR312883.1|DR312883
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017112|gb|DR312858.1|DR312858
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017114|gb|DR312860.1|DR312860
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017118|gb|DR312864.1|DR312864
EST:     ATCAAAGAGAACTGAAGCTATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017141|gb|DR312887.1|DR312887
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017111|gb|DR312857.1|DR312857
EST:     ATCAAAGAGAACTGAAGCTATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017107|gb|DR312853.1|DR312853
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017131|gb|DR312877.1|DR312877
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017095|gb|DR312841.1|DR312841
EST:     ATCAAAGAGAACTGAAGCTATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017146|gb|DR312892.1|DR312892
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGTAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017136|gb|DR312882.1|DR312882
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017102|gb|DR312848.1|DR312848
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGT-GTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|116429180|gb|EG471772.1|EG471772
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017143|gb|DR312889.1|DR312889
EST:     ATCAAAGAGAACTGAAGCAATAGGC--TTCAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017098|gb|DR312844.1|DR312844
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017135|gb|DR312881.1|DR312881
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|116399767|gb|EG442359.1|EG442359
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017101|gb|DR312847.1|DR312847
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGT-GTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|116437428|gb|EG480020.1|EG480020
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017106|gb|DR312852.1|DR312852
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017119|gb|DR312865.1|DR312865
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017149|gb|DR312895.1|DR312895
EST:     GAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: GAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017104|gb|DR312850.1|DR312850
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017134|gb|DR312880.1|DR312880
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGT-GTCATDTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017127|gb|DR312873.1|DR312873
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGT-GTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017147|gb|DR312893.1|DR312893
EST:     ATCAAAGAGAACTGAAGCTATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|152035106|gb|BP844740.2|BP844740
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017113|gb|DR312859.1|DR312859
EST:     ATCAAAGAGAACTGAAGCTATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
EST: gi|86017133|gb|DR312879.1|DR312879
EST:     ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATG                         ACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG
genomic: ATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttc ... tttattgcagACTTTCAAGCGCAGGAATGGTGGCAGGAACAAGCATAACCGTGGTCATGTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TATTTCGCAAATATTAGGGTTCCTGCACTCTTCTTCTTCCCTGTCGCCGCATCAAAGAGAACTGAAGCAATAGGCTTTTGAAGCTCTCTGCATAAACATGgcaagttttctccttctttgttagattcatagtttagaacacagaatcaagctcacagtgattttgaaagcgaaattgtgtattgaattcgagtttgctttttattgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC