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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGATATTCTTATTCCTTTGCTGTATCATCTTCTTCTTCTACTTCGTCCTCATCATCGTCACATAGATCCTCCTTTTTCGTTAATTGGGGAGAGATATACgtaacagctcttctctctacaaagaagttgacttttgcatccttacatctctcaaatctttctctggttaatctgtattcgtgtatttttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G55770.6
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47829977|gb|CK119661.1|CK119661
EST:     CATCATCGTCACATAGATCCTCCTTTTTCGTTAATTGGGGAGAGATATAC                         TTTCTTTTGAGGATCAGATCGTGACAGGGTTTAGCTCAAGGAGAG
genomic: CATCATCGTCACATAGATCCTCCTTTTTCGTTAATTGGGGAGAGATATACgtaacagctc ... atttttgcagTTTCTTTTGAGGATCAGATCGTGACAGGGTTTAGCTCAAGGAGAG
EST: gi|124724864|gb|EH816266.1|EH816266
EST:     CATCATCGTCACATAGATCCTCCTTTTTCGTTAATTGGGGAGAGATATAC                         TTTCTTTTGAGGATCAGATCG
genomic: CATCATCGTCACATAGATCCTCCTTTTTCGTTAATTGGGGAGAGATATACgtaacagctc ... atttttgcagTTTCTTTTGAGGATCAGATCG
EST: gi|125128253|gb|EL172679.1|EL172679
EST:     AATTGGGGAGAGATATAC                         TTTCTTTTGAGGATCAGATCGTGACAGGGTTTAGCTCAAGGAGAG
genomic: AATTGGGGAGAGATATACgtaacagctc ... atttttgcagTTTCTTTTGAGGATCAGATCGTGACAGGGTTTAGCTCAAGGAGAG
EST: gi|124891350|gb|EH970252.1|EH970252
EST:     TTGGGGAGAGATATAC                         TTTCTTTTGAGGATCAGATCGTGACAGGGTTTAGCTCAAGGAGAG
genomic: TTGGGGAGAGATATACgtaacagctc ... atttttgcagTTTCTTTTGAGGATCAGATCGTGACAGGGTTTAGCTCAAGGAGAG
EST: gi|164227208|gb|ES057132.1|ES057132
EST:     TCATCGTCACATAGATCCTCCTTTTTCGTTAATTGGGGAGAGATATAC                         TTTCTTTTGAGGATCAGATCGTGACAGGGTTTAGCTCAAGGAGAGGGTGA
genomic: TCATCGTCACATAGATCCTCCTTTTTCGTTAATTGGGGAGAGATATACgtaacagctc ... atttttgcagTTTCTTTTGAGGATCAGATCGTGACAGGGTTTAGCTCAAGGAGAGGGTGA
EST: gi|124706444|gb|EH797846.1|EH797846
EST:     CATCATCGTCACATAGATCCTCCTTTTTCGTTAATTGGGGAGAGATATAC                         TTTCTTTTGAGGAT
genomic: CATCATCGTCACATAGATCCTCCTTTTTCGTTAATTGGGGAGAGATATACgtaacagctc ... atttttgcagTTTCTTTTGAGGAT