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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTCTACGGCGATCTCTTTCCGGTTATCACTTCGTCACTACACATTTGCTTCTTCCGTTTTCGTATCGGATCGAATACTATTCATCTTTCTTCGAATCGGgtgagttcgagaatctaaagcttacacctttagttacgattcgtctgctgtttgattttgaattcatatatttgtttatctgcagaactatccattcact...

Basic information

species Arabidopsis thaliana
transcript AT3G55520.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164237973|gb|ES129257.1|ES129257
EST:     TACTATTCATCTCTCTTCGAATCGG                         GTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGAGA
genomic: TACTATTCATCTTTCTTCGAATCGGgtgagttcga ... tgtgaattagGTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGAGA
EST: gi|86027819|gb|DR323572.1|DR323572
EST:     TCTTCCGTTTTCGTATCGGATCGAATACTATTCATCTTTCTTCGAATCGG                         GTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGAGA
genomic: TCTTCCGTTTTCGTATCGGATCGAATACTATTCATCTTTCTTCGAATCGGgtgagttcga ... tgtgaattagGTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGAGA
EST: gi|86027820|gb|DR323573.1|DR323573
EST:     TCTTCCGTTTTCGTATCGGATCGAATACTATTCATCTTTCTTCGAATCGG                         GTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGAGA
genomic: TCTTCCGTTTTCGTATCGGATCGAATACTATTCATCTTTCTTCGAATCGGgtgagttcga ... tgtgaattagGTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGAGA
EST: gi|86027816|gb|DR323569.1|DR323569
EST:     TCTTCCGTTTTCGTATCGGATCGAAYACTATTCATCTTTCTTCGAATCGG                         GTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGGGA
genomic: TCTTCCGTTTTCGTATCGGATCGAATACTATTCATCTTTCTTCGAATCGGgtgagttcga ... tgtgaattagGTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGAGA
EST: gi|86027814|gb|DR323567.1|DR323567
EST:     TCTTCCGTTTTCGTATCGGATCGAATACTATTCATCTTTCTTCGAATCGG                         GTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGAGA
genomic: TCTTCCGTTTTCGTATCGGATCGAATACTATTCATCTTTCTTCGAATCGGgtgagttcga ... tgtgaattagGTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGAGA
EST: gi|86027813|gb|DR323566.1|DR323566
EST:     TCTTCCGTTTTCGTATCGGATCGAATACTATTCATCTTTCTTCGAATCGG                         GTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGAGA
genomic: TCTTCCGTTTTCGTATCGGATCGAATACTATTCATCTTTCTTCGAATCGGgtgagttcga ... tgtgaattagGTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGAGA
EST: gi|86027818|gb|DR323571.1|DR323571
EST:     TCTTCCGTTTTCGTATCGGATCGAATACTATTCATCTTTCTTCGAATCGG                         GTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGAGA
genomic: TCTTCCGTTTTCGTATCGGATCGAATACTATTCATCTTTCTTCGAATCGGgtgagttcga ... tgtgaattagGTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGAGA
EST: gi|86027815|gb|DR323568.1|DR323568
EST:     TCTTCCGTTGTCGTATCGGATCGAATACTATTCATCTTTCTTCGAATCGG                         GTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGAGA
genomic: TCTTCCGTTTTCGTATCGGATCGAATACTATTCATCTTTCTTCGAATCGGgtgagttcga ... tgtgaattagGTTTCTTTGAACCTTTGAAGCTATGGGTGATGCAATCGATTTGAGTGGAGA