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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAATGTGAGGAAAAGGGAAGCTGTGGCTGTTCACTGGCTTCAACATTCTCTTTATGATGTCACTGGCTCTGATGCACACACTCTCTGGTTACTCCAAAGgtaaaataaacattaccttttaatcactctttatctataaattattttaagattatataggaaagatatgttctaaaaagtggcttttttggttaatgattggggaatgaacag

Basic information

species Arabidopsis thaliana
transcript AT3G54220.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G54220.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA09G40620.1 (Glycine max), 5'ss of exon 6
TCAATGTGAGGAAAAGGGAAGCTGTGGCTGTTCACTGGCTTCAACATTCTCTTTATGATGTCACTGGCTCTGATGCACACACTCTCTGGTTACTCCAAAGgtaaaataaacattaccttttaatcactctttatctataaattattttaagattatataggaaagatatgttctaaaaagtggcttttttggttaatgattggggaatgaacag
||||||| || ||||  |||||||| |||||||||||| | |||||||| || ||||||||||||||||| ||  |  ||||  | ||| |  | |||||||    | || |     |||   ||  | || ||  || | ||| ||  | ||    |   |    |||| | |  | | |   |  ||||  | ||  || | |         
TCAATGTTAGCAAAACAGAAGCTGTTGCTGTTCACTGGTTGCAACATTCCCTCTATGATGTCACTGGCTCAGACACCAACACCTTGTGGCTCTTGCAAAGgttgg-tgaagaaagggtttatgtcgat-ttcattcattatttaattctacatggctttatat---tatggtttggataat---tcatttgcatgatctttagaggca------

upper sequence: AT3G54220.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA18G45220.1 (Glycine max), 5'ss of exon 4
TCAATGTGAGGAAAAGGGAAGCTGTGGCTGTTCACTGGCTTCAACATTCTCTTTATGATGTCACTGGCTCTGATGCACACACTCTCTGGTTACTCCAAAGgtaaaataaacattaccttttaatcactctttatctataaattattttaagattatataggaaagatatgttctaaaaagtggcttttttggttaatgattggggaatgaacag
|||||||  | ||||  |||||||| |||||||||||| | |||||||| || ||||||||||||||||| ||  |  ||||  | ||| |  | || |||||   | || |     ||||| |     ||||  |  |  | |||     |||   |     |  | | ||| |     ||||||| |   |||   |||||  |||      
TCAATGTTTGCAAAACCGAAGCTGTTGCTGTTCACTGGTTGCAACATTCCCTCTATGATGTCACTGGCTCAGACACCAACACCTTGTGGCTCTTGCAGAGgtagg-tgaagaaagggttttagt-----tttaggtccatttcattcattcattcatttatttaattctattc-actgcatggctttat-atttatgcattggataat------