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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTTCGCTATTCACTCTTCTTTCGTCGCTTCCGGTTATATCCTCACCGCCACCGGACGGCCTGCTTTCGCCGACGAGGCTCTCTCTTCGTCTTCTCAGAgttagtattgattccgtttagttgtttttctgattttttctagggtttaggtttctgattttgtacgattttggaatttttag

Basic information

species Arabidopsis thaliana
transcript AT3G53970.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116439792|gb|EG482384.1|EG482384
EST:     CACCGGACGGCCTGCTTTCGCCGACGAGGCTCTCTCTTCGTCTTCTCAGA                         ATGATGTTGGAATCGAAGGATGGAACGAATTCGAGGGAGAGTATGCGTTTG
genomic: CACCGGACGGCCTGCTTTCGCCGACGAGGCTCTCTCTTCGTCTTCTCAGAgttagtattg ... gaatttttagATGATGTTGGAATCGAAGGATGGAACGAATTCGAGGGAGAGTATGCGTTTG
EST: gi|116406372|gb|EG448964.1|EG448964
EST:     CACCGGACGGCCTGCTTTCGCCGACGAGGCTCTCTCTTCGTCTTCTCAGA                         ATGATGTTGGAATCGAAGGATGGAACGAATTCAAGGGAGAGTATGCGTTTG
genomic: CACCGGACGGCCTGCTTTCGCCGACGAGGCTCTCTCTTCGTCTTCTCAGAgttagtattg ... gaatttttagATGATGTTGGAATCGAAGGATGGAACGAATTCGAGGGAGAGTATGCGTTTG