Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACAGCTGAGAAATTTTCTCCGGCGAGTTTTCTAGACAAAAAAGAAACCGGAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTGgtacttttgttcaccgttgaattctcaatttggtaatttaacccgaaatgtatcgaattcttacaaatgttttcaaatttttcgtctttggaattggattttgtag

Basic information

species Arabidopsis thaliana
transcript AT3G53580.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G53580.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GRMZM2G119502_T01 (Zea mays), 5'ss of exon 1
-CACAGCTGAGAAATTTTCTCCGGCGAGTTTTCTAGACAAAAAAGAAACCGGAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTGgtacttttgttcaccgttgaattctcaatttggtaatttaacccgaaatgtatcgaattcttacaaatgtt---ttcaaatttttcgtctttggaattg--gattttgtag-----------------------------------------------------------------
 | ||| |  |   |   ||||  ||  | |      |    |        | | ||| |||||||| |||||||| ||||||||||| ||||||||  |||| |   ||||  || ||   | |  | | |  | |  ||  |||    ||   |  ||| |     || |     ||  |      | | || ||||   ||| || |                                                                   
CCCCAGGTCCGGCGTCGCCTCCT-CGTTTCTCGAGCGCCGCGAGTCGGAGCGCGCTCTCCACTTTGTCAAATACCAGGGCCTCGGCAACGACTTCATAATGgtgcgactgttt-ccatt---tcccaactctcttcaactattccgcgtcgtgcagtgttcatttgggtggtgaccccacgtcgagaatttgtgcaattcgtgatgttctgatttttgaaagctctgctactgaagacacttaagttttgtttgcttgttcatgtttcgattcgtag

upper sequence: AT3G53580.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: AC182617.3_FGT001 (Zea mays), 5'ss of exon 1
-CACAGCTGAGAAATTTTCTCCGGCGAGTTTTCTAGACAAAAAAGAAACCGGAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTGgtacttttgttcaccgttgaattctcaatttggtaatttaacccgaaatgtatcgaattcttacaaatgtt---ttcaaatttttcgtctttggaattg--gattttgtag-----------------------------------------------------------------
 | ||| |  |       | ||  ||  | |      |    |        | | ||| |||||||| |||||||| ||||||||||| ||||||||  |||| |   ||||  |||||   | |  | | |  | |  ||  |||    ||   |  ||| |     || |     ||  |      | | || |||    ||| || |                                                                   
CCCCAGGTCCGGCGCCGCCACCT-CGTTTCTCGAGCGCCGCGAGTCGGAGCGCGCTCTCCACTTTGTCAAATACCAGGGCCTCGGCAACGACTTCATAATGgtgcgactgttt-ccgtt---tcccaactctcttcaactattccgcgccgtgcagtgttcatttgggtggtgaccccacgtcgagaatttgtgcaatccgtgatgttctgatttttgaaagctctgctactgaagacacttaagttttgtttgcttgttcatgtttcgattcgtag

upper sequence: AT3G53580.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv08s0040g02540.t01 (Vitis vinifera), 5'ss of exon 1
CACAGCTGAGAAATTTTCTCCGGCGAGTTTTCTAGACAAAAAAGAAACCGGAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTGgtacttttgttcaccgttgaatt--ctcaatttggtaatttaacccgaaatgtatcgaattcttacaaatgttttcaaatttttcgtctttggaattggattttgtag
  |   ||||||    |||| | |   |||||| |||   |||||||  ||| |||| || || || || |||||||||||||||||||||||||| |||||| || | ||     ||  |||  ||   ||         ||  |   |        ||  ||  | |  |    | || ||| || |||||     ||||||    
AGCCCTTGAGAAGGGCTCTCAGACTTCTTTTCTGGACCGCAAAGAAAGTGGATTTCTGCATTTCGTCAAGTACCATGGCCTCGGCAATGACTTCATCTTGgtaattcttttattattttcatttgcttggttgctcgggaaaatgcagtaaaagaatcataatttgagacctaggaagatatttggtttttggt----gatttt----

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86065675|gb|DR361432.1|DR361432
EST:     GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTG                         GTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
genomic: GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTGgtacttttgt ... gattttgtagGTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
EST: gi|86065682|gb|DR361439.1|DR361439
EST:     GAGTTCTTCACTTTGTGAAATACCATAGCCTCGGCAATGACTTCATTTTG                         GTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
genomic: GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTGgtacttttgt ... gattttgtagGTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
EST: gi|86065693|gb|DR361450.1|DR361450
EST:     GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTG                         GTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
genomic: GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTGgtacttttgt ... gattttgtagGTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
EST: gi|86065698|gb|DR361455.1|DR361455
EST:     GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTG                         GTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
genomic: GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTGgtacttttgt ... gattttgtagGTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
EST: gi|86065695|gb|DR361452.1|DR361452
EST:     GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGSAATGACTTCATTTTG                         GTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
genomic: GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTGgtacttttgt ... gattttgtagGTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
EST: gi|86065688|gb|DR361445.1|DR361445
EST:     GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTG                         GTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
genomic: GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTGgtacttttgt ... gattttgtagGTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
EST: gi|86065702|gb|DR361459.1|DR361459
EST:     GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTG                         GTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
genomic: GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTGgtacttttgt ... gattttgtagGTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
EST: gi|86065672|gb|DR361429.1|DR361429
EST:     GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTG                         GTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
genomic: GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTGgtacttttgt ... gattttgtagGTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
EST: gi|86065700|gb|DR361457.1|DR361457
EST:     GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTG                         GTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
genomic: GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTGgtacttttgt ... gattttgtagGTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
EST: gi|86065704|gb|DR361461.1|DR361461
EST:     GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTG                         GTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
genomic: GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTGgtacttttgt ... gattttgtagGTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
EST: gi|86060661|gb|DR356418.1|DR356418
EST:     GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTG                         GTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
genomic: GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTGgtacttttgt ... gattttgtagGTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
EST: gi|86065689|gb|DR361446.1|DR361446
EST:     GAGTTCTTCACTTTGTGAAATACCATAGCCTCGGCAATGACTTCATTTTG                         GTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
genomic: GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTGgtacttttgt ... gattttgtagGTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
EST: gi|86065673|gb|DR361430.1|DR361430
EST:     GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTG                         GTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
genomic: GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTGgtacttttgt ... gattttgtagGTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
EST: gi|86065690|gb|DR361447.1|DR361447
EST:     GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTG                         GTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
genomic: GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTGgtacttttgt ... gattttgtagGTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
EST: gi|164195423|gb|EL983350.1|EL983350
EST:     TACCATGGCCT-GGCAATGACTTCATTTTG                         G-CGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
genomic: TACCATGGCCTCGGCAATGACTTCATTTTGgtacttttgt ... gattttgtagGTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
EST: gi|86065697|gb|DR361454.1|DR361454
EST:     GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTG                         GTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
genomic: GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTGgtacttttgt ... gattttgtagGTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
EST: gi|86065677|gb|DR361434.1|DR361434
EST:     GAGTTCTTCACTTTGTAAAATACCATGGCCTCGGCAATGACTTCATTTTG                         GTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
genomic: GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTGgtacttttgt ... gattttgtagGTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
EST: gi|86065706|gb|DR361463.1|DR361463
EST:     GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTG                         GTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
genomic: GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTGgtacttttgt ... gattttgtagGTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
EST: gi|86065694|gb|DR361451.1|DR361451
EST:     GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTSATTTTG                         GTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
genomic: GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTGgtacttttgt ... gattttgtagGTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
EST: gi|86065699|gb|DR361456.1|DR361456
EST:     GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTG                         GTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
genomic: GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTGgtacttttgt ... gattttgtagGTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
EST: gi|86065696|gb|DR361453.1|DR361453
EST:     GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTG                         GTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
genomic: GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTGgtacttttgt ... gattttgtagGTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
EST: gi|86065683|gb|DR361440.1|DR361440
EST:     GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTG                         GTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
genomic: GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTGgtacttttgt ... gattttgtagGTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
EST: gi|86065671|gb|DR361428.1|DR361428
EST:     GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTG                         GTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
genomic: GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTGgtacttttgt ... gattttgtagGTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
EST: gi|86065691|gb|DR361448.1|DR361448
EST:     GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTG                         GTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
genomic: GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTGgtacttttgt ... gattttgtagGTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
EST: gi|86065687|gb|DR361444.1|DR361444
EST:     GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTG                         GTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAWSCAGGCGGC
genomic: GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTGgtacttttgt ... gattttgtagGTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAA-CAGGCGGC
EST: gi|125119947|gb|EL167915.1|EL167915
EST:     AGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTTG                         GTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCG
genomic: AGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCA-TTTTGgtacttttgt ... gattttgtagGTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCG
EST: gi|86065679|gb|DR361436.1|DR361436
EST:     GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTG                         GTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
genomic: GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTGgtacttttgt ... gattttgtagGTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
EST: gi|86065685|gb|DR361442.1|DR361442
EST:     GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTG                         GTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
genomic: GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTGgtacttttgt ... gattttgtagGTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
EST: gi|86065692|gb|DR361449.1|DR361449
EST:     GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTG                         GTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
genomic: GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTGgtacttttgt ... gattttgtagGTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
EST: gi|86065680|gb|DR361437.1|DR361437
EST:     GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTG                         GTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG
genomic: GAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTGgtacttttgt ... gattttgtagGTCGATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCG