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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTAATTCGACACGATGTTGTTGAGCCAATCCTCCTTGAGGTCGATCAGATTTACCATTTAGCTTGTCCAGCTTCACCTGTTCATTACAAGTATAATCCAgtcaagactatcatatccttttgattacgggtcgtgatttgcaagttctgattctaaatccgttatacaaatttaggcaacattaggttggtgatcattg...

Basic information

species Arabidopsis thaliana
transcript AT3G53520.4
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G53520.4 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GRMZM2G370048_T01 (Zea mays), 5'ss of exon 2
GCTAATTCGACACGATGTTGTTGAGCCAATCCTCCTTGAGGTCGATCAGATTTACCATTTAGCTTGTCCAGCTTCACCTGTTCATTACAAGTATAATCCAgtcaagactatcatatccttt-tgattacgggtcgtgatttgcaagttctgattctaaatccg--ttatacaaatttaggcaacattaggttgg-tgatcattg--------
            |||||| || || ||||||||||| |||||||| | ||| |||||  | || || || || || || ||||||||||||||||| ||| ||||||| |||||||||||   || |     || |   |||    | || |   | ||  ||  || | ||  | |   ||   ||   |||| ||      |        
------------CGATGTAGTCGAACCAATCCTCCTCGAGGTCGACCGGATCTACCACCTCGCATGCCCCGCGTCGCCCGTTCATTACAAGTATAACCCAATCAAGACGATCatatccttcacgactggatctcatcggttgattttgcttacattgaaagcgacttgttcacctgttttcattttttttttgggtgggtggcgggctggtt

upper sequence: AT3G53520.4 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv08s0040g02710.t01 (Vitis vinifera), 5'ss of exon 2
GCTAATTCGACACGATGTTGTTGAGCCAATCCTCCTTGAGGTCGATCAGATTTACCATTTAGCTTGTCCAGCTTCACCTGTTCATTACAAGTATAATCCAgtcaagactatcatatcctt-ttgattacgggtcgtgatttgcaagttctgattctaaatccgttatacaaatttaggca---acattaggttggtgatcattg--------------------------
                            || ||  | ||||| |||||||| || || || ||||| || ||||| || |||||||||||||||||||| || || || || |||||||| ||||||       ||   |||||| || ||||| |   |  ||| |      ||           ||   || |    | ||                           
---------------------------GATACTGTTGGAGGTGGATCAGATCTATCACTTGGCTTGCCCTGCTTCCCCAGTTCATTACAAGTATAATCCTGTTAAAACAATTATATCCTTATTGATTgtta--tgttggttgcaaattttgatt-tgggtttgttgtgtgcgattgcctttttgtcttgtcttagcctccgtttagttgtctggaaaactgaggaagaga

upper sequence: AT3G53520.4 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: PP1S60_124V6.1 (Physcomitrella patens), 5'ss of exon 1
GCTAATTCGACACGATGTTGTTGAGCCAATCCTCCTTGAGGTCGATCAGATTTACCATTTAGCTTGTCCAGCTTCACCTGTTCATTACAAGTATAATCCAgtcaagactatcatatccttttgattacgggtcgtgatttgcaagttctgattcta---aatccgttatacaaatttaggcaacattaggttggtg-atcattg--------
            ||| || || |||||  || | || |||||||||||||| |||||  | ||||| || || |||||||| || |||||||  || || |||||||| |||||||||||||     |    |   | |||    |   | ||      ||   | |   || | ||   ||       | || ||  |   ||        
------------CGACGTCGTGGAGCCTCTCTTGCTGGAGGTCGATCAGATCTACCACCTTGCTTGCCCTGCCTCACCTGTCCACTACAAGTTCAACCCTGTCAAGACAATCatatccttttccaccctctcctccagttgatgatcacgttttcgcacaaaatgcttgtcagactttatcagagcgtagctgttgtgtttctgttgtgcct

upper sequence: AT3G53520.4 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: PP1S120_29V6.1 (Physcomitrella patens), 5'ss of exon 1
GCTAATTCGACACGATGTTGTTGAGCCAATCCTCCTTGAGGTCGATCAGATTTACCATTTAGCTTGTCCAGCTTCACCTGTTCATTACAAGTATAATCCAgtcaagactatcatatccttttgattacggg-tcgtga-----tttgcaagttctgattctaaat----ccgttataca-aatttaggcaacattaggttggtgatcattg-------------------------------
                         ||  |  | || ||||| || |||||||||||| | || ||||| || || || || |||||||| |  |||||| |||||||||||||||||||||   | |||| || |||     ||   || |  ||| | ||  |       || | || | |      | ||    |   ||   | | |                               
------------------------ACCCCTGTTGCTGGAGGTGGACCAGATTTACCATCTGGCATGTCCGGCGTCGCCCGTGCATTACAAATTCAATCCAATCAAGACTATCATATCCTTTTTTgttcgggatcttgaatttattctgaattattgagtttatgtagtgttattttgcatagtccttctagcagagagaatgtatccgtggtcgtgcagcctccttgacctgcctccacaag