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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACTTATTTCAAGACGCCTGAAGGGAAGTATAAGCTTCACTACGAGAAAACGCATTCCTCTGGTCTCCTTCATTACGCACATGGCAAAACTGTTACTCAGgtaaagatcaaatttttatatttgggtttaatagtttgattcgtcattaggatttctaatcattcaaatcggcaatttcagagaattagtatcgatggtt...

Basic information

species Arabidopsis thaliana
transcript AT3G53390.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G53390.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA19G36480.1 (Glycine max), 5'ss of exon 1
GACTTATTTCAAGACGCCTGAAGGGAAGTATAAGCTTCACTACGAGAAAACGCATTCCTCTGGTCTCCTTCATTACGCACATGGCAAAACTGTTACTCAGgtaaagatcaaatttttatatttgggtttaata--gtttgattcgtcatta-ggatttctaatcattcaaatcggcaattt-cagagaattagtatcgatggtt
||| |||||||| || || || ||||  ||||||||||| |||||||| || ||  | || ||||| ||||||||||| ||||||||||| |||||||||||     | |||  |||    |     ||| |    || | || |   ||   ||    |  |   |  |||   || | | || |   | | |||| ||    
GACCTATTTCAAAACCCCCGAGGGGAGATATAAGCTTCATTACGAGAAGACTCACCCTTCCGGTCTTCTTCATTACGCCCATGGCAAAACCGTTACTCAGgtttcccttaaacctttgcgatcattcttactgttattggttttggggttgtagagacttgctttcttcaatgctcattatgcataatctaattatctat----

upper sequence: AT3G53390.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA03G33740.1 (Glycine max), 5'ss of exon 1
GACTTATTTCAAGACGCCTGAAGGGAAGTATAAGCTTCACTACGAGAAAACGCATTCCTCTGGTCTCCTTCATTACGCACATGGCAAAACTGTTACTCAGgtaaagatcaaatttttatatttgggtttaatagt-ttgattcgtcatta--ggatttctaatcattcaaatcggcaatttcagagaattagtatcgatggtt
||| |||||||| || || || || |  ||||||||||| |||||||| || ||  | || ||||| ||||||||||| ||||||||||| |||||||||||     | |||  |||    |     ||| |  | ||||||    ||||  || |||    |  |  | |   ||  | |   |   | | |||   |    
GACCTATTTCAAAACCCCCGAGGGAAGATATAAGCTTCAATACGAGAAGACTCACCCTTCCGGTCTTCTTCATTACGCCCATGGCAAAACCGTTACTCAGgtttcccttaaacctttgcgatcatacttactgttattgattgtaaattattggttttagggttgtagagacttgctttcttcaatgctcattatgtgtt---