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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATCGGTGACTCATTCAAAACCGGCCGGTACGTTGTCCAGAGCAAACTCGGTTGGGGCCATTTCTCTACTGTTTGGCTCTCCTGGGATACTCAATCCTCTgtacgcatctatctctctctctcgccacacgaattgcttgaaatgctttagagattaatttttcgttgctttgtttgtgtgattttcttactcgtatatcgaatgtacag

Basic information

species Arabidopsis thaliana
transcript AT3G53030.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G53030.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA13G21320.1 (Glycine max), 5'ss of exon 1
GATCGGTGACTCATTCAAAACCGGCCGGTACGTTGTCCAGAGCAAACTCGGTTGGGGCCATTTCTCTACTGTTTGGCTCTCCTGGGATACTCAATCCTCTgtacgcatctatctctctctctcgccacacgaattgcttgaaatgctttagagattaatttttcgttgctttgtttgtgtgattttcttactcgtatatcgaatgtacag
 ||||| ||| | |||||  |||| || ||||| || ||||| ||||||||||||||||||||||| ||||| |||||| | ||||| ||  ||   |||||  |   || |||||||| ||| |      ||    ||    || ||  ||  ||  |||||  || |  |  |   ||  ||||     |     ||  |||      
AATCGGCGACACCTTCAACGCCGGTCGCTACGTCGTTCAGAGTAAACTCGGTTGGGGCCATTTCTCCACTGTCTGGCTCGCTTGGGACACCAAACATTCTgtctgttcctctctctctccctccctctcttaaactttt----tgtttgggatcttttttttttctttccctaat-acgttgttttag-gttaactcatgaaattc----

upper sequence: AT3G53030.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA10G07430.2 (Glycine max), 5'ss of exon 1
GATCGGTGACTCATTCAAAACCGGCCGGTACGTTGTCCAGAGCAAACTCGGTTGGGGCCATTTCTCTACTGTTTGGCTCTCCTGGGATACTCAATCCTCTgtacgcatctatctctctctctcgc-cacacgaattgcttgaaatgctttagagattaatttttcgttgctttgtttgtgtgattttcttactcgtatatcgaatgtacag
 ||||| ||| | ||||   |||| || ||||| || ||||| |||||||| |||||||||||||| ||||| |||||| | ||||| ||  ||   |||||       | |||||||||||| | | |   |     |||    | | |              |  |  || |||  | |   ||| ||  |   || |           
AATCGGCGACGCCTTCAGCGCCGGTCGCTACGTCGTTCAGAGTAAACTCGGCTGGGGCCATTTCTCCACTGTCTGGCTCGCTTGGGACACCAAACATTCTgtctcttcttctctctctctctctctctcttaagccttttgtttcgatctcc---cccccccccccctaattcgttgttttaggtttattcttgaaatgtttt--------