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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCGTCGATCGAGTCGGAGTCCTCTCTCTTCGGAATTCGGATTCCGTTGAGTTCACTCGCCGGCGTTCTGGTTTCTCGACGTTGATCTACGAATCACCCGgtagttagcattctgttggatagattgatgaatgttttcttcgattttttttttactgatcttgttgtggatctctcgtag

Basic information

species Arabidopsis thaliana
transcript AT3G51820.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116437523|gb|EG480115.1|EG480115
EST:     GTTCACTCGCCGGCGTTCTGGTTTCTCGACGTTGATCTACGAATCACCCG                         GGCGGAGATTTGTTGTGCGTGCGGCG
genomic: GTTCACTCGCCGGCGTTCTGGTTTCTCGACGTTGATCTACGAATCACCCGgtagttagca ... tctctcgtagGGCGGAGATTTGTTGTGCGTGCGGCG
EST: gi|125086597|gb|EL146022.1|EL146022
EST:     GTTCACTCGCCGGCGTTCTGGTTTCTCGACGTTGATCTACGAATCACCCG                         GGCGGAGATTTGTTGTGCGTGCGGCGGAGA
genomic: GTTCACTCGCCGGCGTTCTGGTTTCTCGACGTTGATCTACGAATCACCCGgtagttagca ... tctctcgtagGGCGGAGATTTGTTGTGCGTGCGGCGGAGA