1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCGTTGGAGCTTAGCAAGACGAACAAGGATCGGATCAACACTTCGTCTTCCTTCAATTCATTCAAGAACAATTACCTCCTCGTTTTCTCTATTATGATGGgtacgtctctccgccattatcgcttctcgatttcactctcttattccttattgcggaatcagctctgtgattgattgattgattgatcggcacctgcaat...
species | Arabidopsis thaliana |
transcript | AT3G49310.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTTCAATTCATTCAAGAACAATTACCTCCTCGTTTTCTCTATTATGATGG CTGGGGATTGGCTTCAGGGTCCTTATGTGTATTACCTTTACAGCACTTATGEST: gi|124822891|gb|EH907757.1|EH907757
genomic: CTTCAATTCATTCAAGAACAATTACCTCCTCGTTTTCTCTATTATGATGGgtacgtctct ... gttgtttcagCTGGGGATTGGCTTCAGGGTCCTTATGTGTATTACCTTTACAGCACTTATG
EST: AACAATTACCTCCTCGTTTTCTCTATTATGATGG CTGGGGATTGGCTTCAGGGTCCTTATGTGTATTACCTTTACAGCAACTTATEST: gi|19876532|gb|AU237363.1|AU237363
genomic: AACAATTACCTCCTCGTTTTCTCTATTATGATGGgtacgtctct ... gttgtttcagCTGGGGATTGGCTTCAGGGTCCTTATGTGTATTACCTTTACAGCA-CTTAT
EST: CTTCAATTCATTCAAGAACAATTACCTCCTCGTTTTCTCTATTATGATGG CTGGGGATTGGCTTCAGGGTCCTTATGTGTATTACCTTTACAGCACTTATG
genomic: CTTCAATTCATTCAAGAACAATTACCTCCTCGTTTTCTCTATTATGATGGgtacgtctct ... gttgtttcagCTGGGGATTGGCTTCAGGGTCCTTATGTGTATTACCTTTACAGCACTTATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGTTGGAGCTTAGCAAGACGAACAAGGATCGGATCAACACTTCGTCTTCCTTCAATTCATTCAAGAACAATTACCTCCTCGTTTTCTCTATTATGATGGgtacgtctctccgccattatcgcttctcgatttcactctcttattccttattgcggaatcagctctgtgattgattgattgattgatcggcacctgcaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctctccg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcgcttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactctct