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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGACTCTTCCCTCTGCTCTTCTCTTCGATTGCGATGGCGTTCTTGTTGATACCGAGAAGGACGGTCACAGGATCTCCTTCAACGACACTTTCAAAGAGgtttctcagttttagttttttggtcattagctcttagcttcggtgatgataattggaatcttttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G48420.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G48420.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv17s0000g09910.t01 (Vitis vinifera), 5'ss of exon 1
GACGACTCTTCCCTCTGCTCTTCTCTTCGATTGCGATGGCGTTCTTGTTGATACCGAGAAGGACGGTCACAGGATCTCCTTCAACGACACTTTCAAAGAGgtttctcagttttagtt---------ttttggtcattagctcttagcttcggtgatgataattgg--aatcttttgcag---------------------
  |  ||||||| || ||||| ||||| || || ||||| || || || ||||| ||||| || |||||  | |||||||||||||||||||||   |||||  |     || | |          |||  ||  ||   | ||| ||    |  |  || ||      | ||||   |                     
TTCAGCTCTTCCATCGGCTCTCCTCTTTGACTGTGATGGGGTGCTCGTCGATACTGAGAAAGATGGTCATCGCATCTCCTTCAACGACACTTTCGCCGAGgtgcccttccttcattcatccgcttatttctgttttttttttttacctcttttttttttagttaattggttttttatggaatgggtgtgttatcagttga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124824716|gb|EH909582.1|EH909582
EST:     ATACCGAGAAGGACGGTCACAGGATCTCCTTCAACGACACTTTCAAAGAG                         AGAGATTTGAATGTTACGTGGGATGTTGATTTATAC
genomic: ATACCGAGAAGGACGGTCACAGGATCTCCTTCAACGACACTTTCAAAGAGgtttctcagt ... tcttttgcagAGAGATTTGAATGTTACGTGGGATGTTGATTTATAC
EST: gi|125209784|gb|EL224738.1|EL224738
EST:     ATCTCCTTCAACGACACTTTCAAAGAG                         AGAGATTTGAATGTTACGTGGGATGTTGATTTATACGGCGAGTTACTTAAA
genomic: ATCTCCTTCAACGACACTTTCAAAGAGgtttctcagt ... tcttttgcagAGAGATTTGAATGTTACGTGGGATGTTGATTTATACGGCGAGTTACTTAAA
EST: gi|125316567|gb|EL330652.1|EL330652
EST:     ATACCGAGAAGGACGGTCACAGGATCTCCTTCAACGACACTTTCAAAGAG                         AGAGATTTGAATGTTACGTGGGATGTTGATTTATACGGCGAGTTACTTAAA
genomic: ATACCGAGAAGGACGGTCACAGGATCTCCTTCAACGACACTTTCAAAGAGgtttctcagt ... tcttttgcagAGAGATTTGAATGTTACGTGGGATGTTGATTTATACGGCGAGTTACTTAAA
EST: gi|47832151|gb|CK121835.1|CK121835
EST:     ATACCGAGAAGGACGGTCACAGGATCTCCTTCAACGACACTTTCAAAGAG                         AGAGATTTGAATGTTACGTGGGATGTTGATTTATACGGCGAGTTACTTAAA
genomic: ATACCGAGAAGGACGGTCACAGGATCTCCTTCAACGACACTTTCAAAGAGgtttctcagt ... tcttttgcagAGAGATTTGAATGTTACGTGGGATGTTGATTTATACGGCGAGTTACTTAAA