1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GGAAGAACCTCTTCTCCAATCTGTTGAGTGTCGTATTTGCCAAGAGGAAGATAGTACTAAGAACCTTGAAGCTCCTTGTGCTTGTAATGGTAGTTTAAAGgtaaacacgttggatctcattgttctttgttttttattggttagagaaaattttcttattgagttttgatttatgcag
species | Arabidopsis thaliana |
transcript | AT3G47550.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATAGTACTAAGAACCTTGAAGCTCCTTGTGCTTGTAATGGTAGTTTAAAG TATGCTCACCGEST: gi|301501426|gb|HO206966.1|HO206966
genomic: ATAGTACTAAGAACCTTGAAGCTCCTTGTGCTTGTAATGGTAGTTTAAAGgtaaacacgt ... atttatgcagTATGCTCACCG
EST: ATAGTACTAAGAACCTTGAAGCTCCTTGTGCTTGTAATGGTAGTTTAAAG TATGCTCACCGCAAGTGTGTTCAGCGTTGGTGTAATGAGAAAGGCGACATAEST: gi|116399259|gb|EG441851.1|EG441851
genomic: ATAGTACTAAGAACCTTGAAGCTCCTTGTGCTTGTAATGGTAGTTTAAAGgtaaacacgt ... atttatgcagTATGCTCACCGCAAGTGTGTTCAGCGTTGGTGTAATGAGAAAGGCGACATA
EST: ATAGTACTAAGAACCTTGAAGCTCCTTGTGCTTGTAATGGTAGTTTAAAG TATGCTCACCGCAAGTGTGTTCAGCGTTGGTGTAATGAGAAAGGCGACATAEST: gi|125324016|gb|EL338096.1|EL338096
genomic: ATAGTACTAAGAACCTTGAAGCTCCTTGTGCTTGTAATGGTAGTTTAAAGgtaaacacgt ... atttatgcagTATGCTCACCGCAAGTGTGTTCAGCGTTGGTGTAATGAGAAAGGCGACATA
EST: TAGTACTAAGAACCTTGAAGCTCCTTTGTGCTTGTAATGGTAGTTTAAAG TATGCTCACCGCAAGTGTGTTCAGCGTTGGTGTAATGAGAAAG
genomic: TAGTACTAAGAACCTTGAAGCTCC-TTGTGCTTGTAATGGTAGTTTAAAGgtaaacacgt ... atttatgcagTATGCTCACCGCAAGTGTGTTCAGCGTTGGTGTAATGAGAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAAGAACCTCTTCTCCAATCTGTTGAGTGTCGTATTTGCCAAGAGGAAGATAGTACTAAGAACCTTGAAGCTCCTTGTGCTTGTAATGGTAGTTTAAAGgtaaacacgttggatctcattgttctttgttttttattggttagagaaaattttcttattgagttttgatttatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC