1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
ACACAGCTTCAATGGCGGTGCAAATGAAACCCTAAAAGTATCTGAGCGAAGGTTCAATTTTGAAGTTGTTTCCCAGAAGAAAGCTAAGAAACTTCGCAAGgtaaaagtcattacctttcatgggtttccttcaaaaatttgatttggcttttagttagtttttgatttgagcttgtgtttctgaagaattttggtggaga...
species | Arabidopsis thaliana |
transcript | AT3G44890.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGTTCAATTTTGAAGTTGTTTCCCAGAAGAAAGCTAAGAAACTTCGCAAG GTAATTTTGAAAGAGGATGTGACGGATTTGGGTAAGCAAGGGEST: gi|124861512|gb|EH945949.1|EH945949
genomic: GGTTCAATTTTGAAGTTGTTTCCCAGAAGAAAGCTAAGAAACTTCGCAAGgtaaaagtca ... tgtctttaagGTAATTTTGAAAGAGGATGTGACGGATTTGGGTAAGCAAGGG
EST: GGTTCAATTTTGAAGTTGTTTCCCAGAAGAAAGCTAAGAAACTTCGCAAG GTAATTTTGAAAGAGGATGTEST: gi|125243171|gb|EL257256.1|EL257256
genomic: GGTTCAATTTTGAAGTTGTTTCCCAGAAGAAAGCTAAGAAACTTCGCAAGgtaaaagtca ... tgtctttaagGTAATTTTGAAAGAGGATGT
EST: GAAGAAAGCTAAGAAACTTCGCAAG GTAATTTTGAAAGAGGATGTGACGGATTTGGGTAAGCAAGGGCAATTACTT
genomic: GAAGAAAGCTAAGAAACTTCGCAAGgtaaaagtca ... tgtctttaagGTAATTTTGAAAGAGGATGTGACGGATTTGGGTAAGCAAGGGCAATTACTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACACAGCTTCAATGGCGGTGCAAATGAAACCCTAAAAGTATCTGAGCGAAGGTTCAATTTTGAAGTTGTTTCCCAGAAGAAAGCTAAGAAACTTCGCAAGgtaaaagtcattacctttcatgggtttccttcaaaaatttgatttggcttttagttagtttttgatttgagcttgtgtttctgaagaattttggtggaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cctttcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttccttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagaat