1 5' 3' | 2 5' 3' |
CCGCCTTTCCCTCGCCGCCATGAATTCACAGTTCTCTGTTTTCCGTCCTAAAATCGACGAGATCTCTCTCCTCTCCATCAACACCTCCGCCTTCTTCCCGgtaattaaattccttattatcaatcgaattagtttagttaattcagattaggaaacacttaattaatctctgttcattatatagatttggttgactttag...
species | Arabidopsis thaliana |
transcript | AT3G44150.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCTCCGCCTTCTTCCCG GACAACTATGGT-GATATATGGTAGCATTCGCGGGTCGAAAATACGCAGCGEST: gi|124878539|gb|EH957976.1|EH957976
genomic: CCTCCGCCTTCTTCCCGgtaattaaat ... atatcttcagGACAACTATGGTGGATATATGGTAGCATTCGCGGGTCGAAAATACGCAGCG
EST: ATCAACACCTCCGCCTTCTTCCCG GACAACTATGGTGGATATATGGTAGCATTCGCGGGTCGAAA
genomic: ATCAACACCTCCGCCTTCTTCCCGgtaattaaat ... atatcttcagGACAACTATGGTGGATATATGGTAGCATTCGCGGGTCGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGCCTTTCCCTCGCCGCCATGAATTCACAGTTCTCTGTTTTCCGTCCTAAAATCGACGAGATCTCTCTCCTCTCCATCAACACCTCCGCCTTCTTCCCGgtaattaaattccttattatcaatcgaattagtttagttaattcagattaggaaacacttaattaatctctgttcattatatagatttggttgactttag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aggaaaca