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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAGATCCAGACAATGTTGTTCAGAGTTGGGATCCAACTCTTGTTAATCCTTGTACTTGGTTTCATGTCACTTGTAATCAACACCATCAAGTCACTCGTCTgtaagatcctctctctgtcacattgttttgatgattcttgaattcgtttcttgtacaagttgttcaatttcaattggaatctatcactgtaatcttgatt...

Basic information

species Arabidopsis thaliana
transcript AT3G43740.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G43740.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv06s0009g01210.t01 (Vitis vinifera), 5'ss of exon 1
CAGATCCAGACAATGTTGTTCAGAGTTGGGATCCAACTCTTGTTAATCCTTGTACTTGGTTTCATGTCACTTGTAATCAACACCATCAAGTCACTCGTCTgtaagatcctct---ctctgtcacattgttttgatgattcttgaattcg---tttcttgtacaagttgttcaatttcaattggaatctatcactgtaatcttgatt
||||||| || || |   ||||||| ||||||||||| || ||||||||||| ||||||||||||||||| ||||| ||  || |||  || |||||  ||||   || |||   |||||   | || |||   |  || ||   |      ||||   ||     ||||   || |     | || |   |   |||  |     
CAGATCCGGATAACGCCCTTCAGAGCTGGGATCCAACCCTCGTTAATCCTTGCACTTGGTTTCATGTCACCTGTAACCAGGACAATCGCGTTACTCGAGTgtatcttcttcttcactctgcgcctttctttctgttttttttctttcttcattttcccttaggctctgtttgcttcctgacagcatttgggaa-ataaggt-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125194417|gb|EL209371.1|EL209371
EST:     TGTACTTGGCTTCATGTCACTTGTAATCAACACCATCAAGTCACTCGTCT                         GGATTTGGGGAATTCAAAC
genomic: TGTACTTGGTTTCATGTCACTTGTAATCAACACCATCAAGTCACTCGTCTgtaagatcct ... ttcttggcagGGATTTGGGGAATTCAAAC