1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTAATTCATGCTTGGACACGATTGTCTCATCTGGAATTCCAAATTCAAACTTGAAGCCTGGAGATTTAGCTGACCTTCCTCTTTTCTCAGTTGGTCACAGgtgttcaacttttctctccttccttaaaccttatgaattctctgtgtcctgaattctgactagtgtcaagttttcaactttctatacag
species | Arabidopsis thaliana |
transcript | AT3G43540.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTTTTCTCAGTTGGTCACAG TAATGGTGCACTGCTCCAAGTTTTGACCGGAAGTTATTTTGCTGAGAAGATEST: gi|125320703|gb|EL334788.1|EL334788
genomic: CTTTTCTCAGTTGGTCACAGgtgttcaact ... ttctatacagTAATGGTGCACTGCTCCAAGTTTTGACCGGAAGTTATTTTGCTGAGAAGAT
EST: TTGAAGCCTGGAGATTTAGCTGACCTTCCTCTTTTCTCAGTTGGTCACAG TAATGGTGCACTGCTCCA
genomic: TTGAAGCCTGGAGATTTAGCTGACCTTCCTCTTTTCTCAGTTGGTCACAGgtgttcaact ... ttctatacagTAATGGTGCACTGCTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTAATTCATGCTTGGACACGATTGTCTCATCTGGAATTCCAAATTCAAACTTGAAGCCTGGAGATTTAGCTGACCTTCCTCTTTTCTCAGTTGGTCACAGgtgttcaacttttctctccttccttaaaccttatgaattctctgtgtcctgaattctgactagtgtcaagttttcaactttctatacag
- - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA