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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGACCTCAGAGCTCAGCAAAAATGGTTCAACGTCTTGTTTACCGATCACGTCACTCTTACGCCACCAAGTCCAACCAACACCGCATCGTCAAAACTCCTGgtaatgtactaaaagctctctaatgtctctttgtagtgactcttgaaagatcattgaaattttgggatctagtttttgttgaaaatttggggttatttggcttaaag

Basic information

species Arabidopsis thaliana
transcript AT3G28900.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86027913|gb|DR323666.1|DR323666
EST:     TCACTCTTACGCSACCAAGTCCAACCAACACCGCATCGTCAAAACTCCTG                         GTGGAAAATTGA
genomic: TCACTCTTACGCCACCAAGTCCAACCAACACCGCATCGTCAAAACTCCTGgtaatgtact ... tggcttaaagGTGGAAAATTGA
EST: gi|86081909|gb|DR377668.1|DR377668
EST:     TCACTCTTACGCCACCAAGTCCAACCAACACCGCATCGTCAAAACTCCTG                         GTGGAAAATTGACTTACCAGACGACGAACAAGAGAGCTAGTGGACCTAAGT
genomic: TCACTCTTACGCCACCAAGTCCAACCAACACCGCATCGTCAAAACTCCTGgtaatgtact ... tggcttaaagGTGGAAAATTGACTTACCAGACGACGAACAAGAGAGCTAGTGGACCTAAGT
EST: gi|152038453|gb|AV823465.2|AV823465
EST:     TCACTCTTACGCCACCAAGTCCAACCAACACCGCATCGTCAAAACTCCTG                         GTGGAAAATTGACTTACCAGACGACGAACAAGAGAGCTAGTGGACCTAAGT
genomic: TCACTCTTACGCCACCAAGTCCAACCAACACCGCATCGTCAAAACTCCTGgtaatgtact ... tggcttaaagGTGGAAAATTGACTTACCAGACGACGAACAAGAGAGCTAGTGGACCTAAGT
EST: gi|86027917|gb|DR323670.1|DR323670
EST:     TCACTCTTACGCCACCAAGTCCAACCAACACCGCATCGTCAAAACTCCTG                         GTGGAAAATTGACTTACCAGACGACGAACAAGAGAGCTAGTGGACCTAAGT
genomic: TCACTCTTACGCCACCAAGTCCAACCAACACCGCATCGTCAAAACTCCTGgtaatgtact ... tggcttaaagGTGGAAAATTGACTTACCAGACGACGAACAAGAGAGCTAGTGGACCTAAGT
EST: gi|86027914|gb|DR323667.1|DR323667
EST:     TCACTCTTACGCCACCAAGTCCAACCAACACCGCATCGTCAAAACTCCTG                         GTGGAAAATTGACTTACCAGACGACGAACAAGAGAGCTAGTGGACCTAAGT
genomic: TCACTCTTACGCCACCAAGTCCAACCAACACCGCATCGTCAAAACTCCTGgtaatgtact ... tggcttaaagGTGGAAAATTGACTTACCAGACGACGAACAAGAGAGCTAGTGGACCTAAGT
EST: gi|86027921|gb|DR323674.1|DR323674
EST:     TCACTCTTACGCCACCAAGTCCAACCAACACCGCATCGTCAAAACTCCTG                         GTGGAAAATTGACTTACCAGACGACGAACAAGAGAGCTAGTGGACCTAAGT
genomic: TCACTCTTACGCCACCAAGTCCAACCAACACCGCATCGTCAAAACTCCTGgtaatgtact ... tggcttaaagGTGGAAAATTGACTTACCAGACGACGAACAAGAGAGCTAGTGGACCTAAGT
EST: gi|86027920|gb|DR323673.1|DR323673
EST:     -CACTCTTACGCCACCAAGTCCAACCAACACCGCATCGTCAAAACTCCTG                         GTGGAAAATTGACTTACCAGACGACGAACAAGAGAGCTAGTGGACCTAAGT
genomic: TCACTCTTACGCCACCAAGTCCAACCAACACCGCATCGTCAAAACTCCTGgtaatgtact ... tggcttaaagGTGGAAAATTGACTTACCAGACGACGAACAAGAGAGCTAGTGGACCTAAGT
EST: gi|86027912|gb|DR323665.1|DR323665
EST:     TCACTCTTACGCCACCAAGTCCAACCAACACCGCATCGTCAAAACTCCTG                         GTGGAAAATTGACTTACCAGACGACGAACAAGAGAGCTAGTGGACCTAAGT
genomic: TCACTCTTACGCCACCAAGTCCAACCAACACCGCATCGTCAAAACTCCTGgtaatgtact ... tggcttaaagGTGGAAAATTGACTTACCAGACGACGAACAAGAGAGCTAGTGGACCTAAGT
EST: gi|86027922|gb|DR323675.1|DR323675
EST:     TCACTCTTACGCCACCAAGTCCAACCAACACCGCATCGTCAAAACTCCTG                         GTGGAAAATTGACTTACCAGACGACGAACAAGAGAGCTAGTGGACCTAAGT
genomic: TCACTCTTACGCCACCAAGTCCAACCAACACCGCATCGTCAAAACTCCTGgtaatgtact ... tggcttaaagGTGGAAAATTGACTTACCAGACGACGAACAAGAGAGCTAGTGGACCTAAGT
EST: gi|86027915|gb|DR323668.1|DR323668
EST:     TCACTCTTACGCCACCAAGTCCAACCAACACCGCATCGTCAAAACTCCTG                         GTGGAAAATTGACTTACCAGACGACGAACAAGAGAGCTAGTGGACCTAAGT
genomic: TCACTCTTACGCCACCAAGTCCAACCAACACCGCATCGTCAAAACTCCTGgtaatgtact ... tggcttaaagGTGGAAAATTGACTTACCAGACGACGAACAAGAGAGCTAGTGGACCTAAGT
EST: gi|86027924|gb|DR323677.1|DR323677
EST:     TCACTCTTACGCCACCAAGTCCAACCAACACCGCATCGTCAAAACTCCTG                         GTGGAAAATTGACTTACCAGACGACGAACAAGAGAGCTAGTGGACCTAAGT
genomic: TCACTCTTACGCCACCAAGTCCAACCAACACCGCATCGTCAAAACTCCTGgtaatgtact ... tggcttaaagGTGGAAAATTGACTTACCAGACGACGAACAAGAGAGCTAGTGGACCTAAGT
EST: gi|86027918|gb|DR323671.1|DR323671
EST:     TCACTCTTACGCCACCAAGTCCAACCAACACCGCATCGTCAAAACTCCTG                         GTGGAAAATTGACTTACCAGACGACGAACAAGAGAGCTAGTGGACCTAAGT
genomic: TCACTCTTACGCCACCAAGTCCAACCAACACCGCATCGTCAAAACTCCTGgtaatgtact ... tggcttaaagGTGGAAAATTGACTTACCAGACGACGAACAAGAGAGCTAGTGGACCTAAGT
EST: gi|86027919|gb|DR323672.1|DR323672
EST:     TCACTCTTACGCCACCAAGTCCAACCAACACCGCATCGTCAAAACTCCTG                         GTGGAAAATTGACTTACCAGACGACGAACAAGAGAGCTAGTGGACCTAAGT
genomic: TCACTCTTACGCCACCAAGTCCAACCAACACCGCATCGTCAAAACTCCTGgtaatgtact ... tggcttaaagGTGGAAAATTGACTTACCAGACGACGAACAAGAGAGCTAGTGGACCTAAGT