1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCATTCTCTCTTCTGACGTGTTTCCCTTCTTCGGTTTCTCATCCTCACGTCCGCCGGATTTCGAGGAAACGAAGAAGAAGAAGAACAACAACAACAAAAGgtctctctcgagtttctatgtttatctttttctataatcccttagtctagtgttgtttagactttcaattctgctccaaaatctctggatttttgaatct...
species | Arabidopsis thaliana |
transcript | AT3G27090.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CCGCCGGATTTCGAGGAAACGAAGAAGAAGAAGAACAACAACAACAAAAG CCTTTTGAGATATGGACAGCTTCTGGCAATTAGGTGATGAGCTACGAGGTCEST: gi|301503164|gb|HO208704.1|HO208704
genomic: CCGCCGGATTTCGAGGAAACGAAGAAGAAGAAGAACAACAACAACAAAAGgtctctctcg ... tttatgctagCCTTTTGAGATATGGACAGCTTCTGGCAATTAGGTGATGAGCTACGAGGTC
EST: CCGCCGGATTTCGAGGAAACGAAGAAGAAGAAGAACAACAACAACAAAAG CCTTTTGAGATATGGACAGCTTCTGGCAATTAGGTGATGAGCTACGAGGTCEST: gi|86024217|gb|DR319970.1|DR319970
genomic: CCGCCGGATTTCGAGGAAACGAAGAAGAAGAAGAACAACAACAACAAAAGgtctctctcg ... tttatgctagCCTTTTGAGATATGGACAGCTTCTGGCAATTAGGTGATGAGCTACGAGGTC
EST: CCGCCGGATTTCGAGGAAACGAAGAAGAAGAAG---AACAACAACAAAAG CCTTTTGAGATATGGACAGCTTCTGGCAATTAGGTGATGAGCTACGAGGTCEST: gi|125093772|gb|EL151311.1|EL151311
genomic: CCGCCGGATTTCGAGGAAACGAAGAAGAAGAAGAACAACAACAACAAAAGgtctctctcg ... tttatgctagCCTTTTGAGATATGGACAGCTTCTGGCAATTAGGTGATGAGCTACGAGGTC
EST: CCGCCGGATTTCGAGGAAACGAAGAAGAAGAAGAACAACAACAACAAAAG CCTTTTGAGATATGGACAGCTTCTGGCAATTAGGTGATGAGCTACGAGEST: gi|86024210|gb|DR319963.1|DR319963
genomic: CCGCCGGATTTCGAGGAAACGAAGAAGAAGAAGAACAACAACAACAAAAGgtctctctcg ... tttatgctagCCTTTTGAGATATGGACAGCTTCTGGCAATTAGGTGATGAGCTACGAG
EST: CCGCCGGATTTCGAGGAAACGAAGAAGAAGAAG---AACAACAACAAAAG CCTTTTGAGATATGGACAGCTTCTGGCAATTAGGTGATGAGCTACGAGGTC
genomic: CCGCCGGATTTCGAGGAAACGAAGAAGAAGAAGAACAACAACAACAAAAGgtctctctcg ... tttatgctagCCTTTTGAGATATGGACAGCTTCTGGCAATTAGGTGATGAGCTACGAGGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCATTCTCTCTTCTGACGTGTTTCCCTTCTTCGGTTTCTCATCCTCACGTCCGCCGGATTTCGAGGAAACGAAGAAGAAGAAGAACAACAACAACAAAAGgtctctctcgagtttctatgtttatctttttctataatcccttagtctagtgttgtttagactttcaattctgctccaaaatctctggatttttgaatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctttttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctgctcc