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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTGCAGTATCTAAGAACATGATTGAGAGTCTCTCTGTTCCTACATTCCGTGTTGGTTATCCTGTGAACACTGACGCTCTTGATGCACTTTACGAGAAGgtgaaattgaattgaatgaaacagatgaagctgatgttgtattgaatgatgaagctgatgttaaatcactgcttttgtttacag

Basic information

species Arabidopsis thaliana
transcript AT3G25860.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G25860.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA01G20720.1 (Glycine max), 5'ss of exon 1
ATCTGCAGTATCTAAGAACATGATTGAGAGTCTCTCTGTTCCTACATTCCGTGTTGGTTATCCTGTGAACACTGACGCTCTTGATGCACTTTACGAGAAGgtgaaattgaattga-------atgaaacagatgaagctgatgttgt-attgaatga--tgaagctgatgttaaatcactgcttttg----tttacag--
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ATCTGCGGTTGCGAAGAACATGGTGGAGAGTCTCTCTGTGCCGACGTTCCGTGTTGGGTACCCAGTTACCACTGATGCACTTGATGCTCTGTATGAGAAGgtatttttatactaatagcttaatagagtcaatttaaataattttttcagtaagccaagtggatataattaaaaattaaaatacatgaatttttacacta
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125101279|gb|EL156446.1|EL156446
EST:     GTGTTGGTTATCCTGTGAACACTGACGCTCTTGATGCACTTTACGAGAAG                         GTGAAGCCAAAGGGTGTAACAATGACAGCTTTATTAGCTAAAGCTGCAGGG
genomic: GTGTTGGTTATCCTGTGAACACTGACGCTCTTGATGCACTTTACGAGAAGgtgaaattga ... ttgtttacagGTGAAGCCAAAGGGTGTAACAATGACAGCTTTATTAGCTAAAGCTGCAGGG
EST: gi|86059806|gb|DR355563.1|DR355563
EST:     GTGTTGGTTATCCTGTGAACACTGACGCTCTTGATGCACTTTACGAGAAG                         GTGAAGCCCAAAGGGTGTAACAATGACAGCTTTATTAGCTAAAGCTGCAGG
genomic: GTGTTGGTTATCCTGTGAACACTGACGCTCTTGATGCACTTTACGAGAAGgtgaaattga ... ttgtttacagGTGAAGCC-AAAGGGTGTAACAATGACAGCTTTATTAGCTAAAGCTGCAGG