1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
AAAGTCGGTGAAGAGAAAGAGATCCAACAAGGTTTGAAGAAGAAGCTTCTTAAAGAAGGTGAAGGATATGAAACTCCTGAGAATGGCGATGAAGTTGAAGgtaattaattaatcgattcagatactaatgcttttcgatttaggtttttttgaatcgaagcttgagcttgatttgtttctgcag
species | Arabidopsis thaliana |
transcript | AT3G25230.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TAAAGAAGGTGAAGGATATGAAACTCCTGAGAATGGCGATGAAGTTGAAG TGCATTACACTEST: gi|86070352|gb|DR366109.1|DR366109
genomic: TAAAGAAGGTGAAGGATATGAAACTCCTGAGAATGGCGATGAAGTTGAAGgtaattaatt ... gtttctgcagTGCATTACACT
EST: TAAAGAAGGTGAAGGATATGAAACTCCTGAGAATGGCGATGAAGTTGAAG TGCATTACACTGGAACTTTGCTTGATGGGACGAAGTTTGATTCGAGTCGTGEST: gi|86070353|gb|DR366110.1|DR366110
genomic: TAAAGAAGGTGAAGGATATGAAACTCCTGAGAATGGCGATGAAGTTGAAGgtaattaatt ... gtttctgcagTGCATTACACTGGAACTTTGCTTGATGGGACGAAGTTTGATTCGAGTCGTG
EST: TAAAGAAGGTGAAGGATATGAAACTCCTGAGAATGGCGATGAAGTTGAAG TGCATTACACTGGAACTTTGCTTGATGGGACGAAGTTTGATTCGAGTCGNGEST: gi|301501375|gb|HO206915.1|HO206915
genomic: TAAAGAAGGTGAAGGATATGAAACTCCTGAGAATGGCGATGAAGTTGAAGgtaattaatt ... gtttctgcagTGCATTACACTGGAACTTTGCTTGATGGGACGAAGTTTGATTCGAGTCGTG
EST: TAAAGAAGGTGAAGGATATGAAACTCCTGAGAATGGCGATGAAGTTGAAG TGCATTACACTGGAACTTTGCTTGATGGGACGAAGTTTGATTCGAGTCGTGEST: gi|116475203|gb|EG517795.1|EG517795
genomic: TAAAGAAGGTGAAGGATATGAAACTCCTGAGAATGGCGATGAAGTTGAAGgtaattaatt ... gtttctgcagTGCATTACACTGGAACTTTGCTTGATGGGACGAAGTTTGATTCGAGTCGTG
EST: TAAAGAAGGTGAAGGATATGAAACTCCTGAGAATGGCGATGAAGTTGAAG TGCATTACACTGGAACTTTGCTTGATGGGACGAGGTTTGATTCGAGTCGTGEST: gi|116434999|gb|EG477591.1|EG477591
genomic: TAAAGAAGGTGAAGGATATGAAACTCCTGAGAATGGCGATGAAGTTGAAGgtaattaatt ... gtttctgcagTGCATTACACTGGAACTTTGCTTGATGGGACGAAGTTTGATTCGAGTCGTG
EST: TAAAGAAGGTGAAGGATATGAAACTCCTGAGAATGGCGATGAAGTTGAAG TGCATTACACTGGAACTTTGCTTGATGGGACGAAGTTTGATTCGAGTCGTGEST: gi|116475202|gb|EG517794.1|EG517794
genomic: TAAAGAAGGTGAAGGATATGAAACTCCTGAGAATGGCGATGAAGTTGAAGgtaattaatt ... gtttctgcagTGCATTACACTGGAACTTTGCTTGATGGGACGAAGTTTGATTCGAGTCGTG
EST: TAAAGAAGGTGAAGGATATGAAACTCCTGAGAATGGCGATGAAGTTGAAG TGCATTACACTGGAACTTTGCTTGATGGGACGAGGTTTGATTCGAGTCGTGEST: gi|116435001|gb|EG477593.1|EG477593
genomic: TAAAGAAGGTGAAGGATATGAAACTCCTGAGAATGGCGATGAAGTTGAAGgtaattaatt ... gtttctgcagTGCATTACACTGGAACTTTGCTTGATGGGACGAAGTTTGATTCGAGTCGTG
EST: TAAAGAAGGTGAAGGATATGAAACTCCTGAGAATGGCGATGAAGTTGAAG TGCATTACACTGGAACTTTGCTTGATGGGACGAAGTTTGATTCGAGTCGTGEST: gi|86070354|gb|DR366111.1|DR366111
genomic: TAAAGAAGGTGAAGGATATGAAACTCCTGAGAATGGCGATGAAGTTGAAGgtaattaatt ... gtttctgcagTGCATTACACTGGAACTTTGCTTGATGGGACGAAGTTTGATTCGAGTCGTG
EST: TAAAGAAGGTGAAGGATATGAAACTCCTGAGAATGGCGATGAAGTTGAAG TGCATTACACTGGAACTTTGCTTGATGGGACGAAGTTTGATTCGAGTCGTG
genomic: TAAAGAAGGTGAAGGATATGAAACTCCTGAGAATGGCGATGAAGTTGAAGgtaattaatt ... gtttctgcagTGCATTACACTGGAACTTTGCTTGATGGGACGAAGTTTGATTCGAGTCGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGTCGGTGAAGAGAAAGAGATCCAACAAGGTTTGAAGAAGAAGCTTCTTAAAGAAGGTGAAGGATATGAAACTCCTGAGAATGGCGATGAAGTTGAAGgtaattaattaatcgattcagatactaatgcttttcgatttaggtttttttgaatcgaagcttgagcttgatttgtttctgcag
- - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG