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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTAAACCTACACAGACTAGTCCACCCAAGTCCACCACCGTAAACGGATCTTCTTCTCCATCGTCTGCGTCAAAAGTAGTCAACAACAATGTTTCCACTgtacgatttctactcctacctctgccgattatgttatggttcaattgagcaatttcatagaaaatttctattggattgtgtaaaattataacctcgaattttggtttatggcaatggtacag

Basic information

species Arabidopsis thaliana
transcript AT3G24190.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125225338|gb|EL239423.1|EL239423
EST:     TAGTCAACAACAATGTTTCCACT                         AGAATTAACGATGTATCAAAAGAGATTAAAAGAGTACGAGCTCAAATGGAA
genomic: TAGTCAACAACAATGTTTCCACTgtacgatttc ... aatggtacagAGAATTAACGATGTATCAAAAGAGATTAAAAGAGTACGAGCTCAAATGGAA
EST: gi|86067840|gb|DR363597.1|DR363597
EST:     CTTCTTCTCCATCGTCTGCGTCNAAAGTAGTCAACAACAATGNTTCCACT                         AGAATTAACGATGTATCAAAAGANATTAAAAGAGTACGAGCTCAAATGGAA
genomic: CTTCTTCTCCATCGTCTGCGTCAAAAGTAGTCAACAACAATGTTTCCACTgtacgatttc ... aatggtacagAGAATTAACGATGTATCAAAAGAGATTAAAAGAGTACGAGCTCAAATGGAA