1 5' 3' | 2 5' 3' | 3 5' 3' |
GTATTCTTCTTCTTGCGAACTCGCTGAAGTCTGAAAGATGCAGgtttgtctctctcgattcgaaaccctagttacttttttttgttcttatctctaattttatacaatttcttgacgattaagctaagcgtagctgaaatctgggaacaatttgctttagttcttgtaaaggttaggtttttaagcagcagatagttatgtaatctcacttttttgtttttgtgcag
species | Arabidopsis thaliana |
transcript | AT3G23325.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: ATTCTTCTTCTTGCGAACTCGCTGAAGTCTGAAAGATGCAG GCAAGTGATAGGTTTAACATAAATTCTEST: gi|164171336|gb|ES065072.1|ES065072
genomic: ATTCTTCTTCTTGCGAACTCGCTGAAGTCTGAAAGATGCAGgtttgtctct ... ttttgtgcagGCAAGTGATAGGTTTAACATAAATTCT
EST: ATTCTTCTTCTTGCGAACTCGCTGAAGTCTGAAAGATG-AG GCAAGTGATAGGTTTAACATAAATTCEST: gi|164202343|gb|ES134671.1|ES134671
genomic: ATTCTTCTTCTTGCGAACTCGCTGAAGTCTGAAAGATGCAGgtttgtctct ... ttttgtgcagGCAAGTGATAGGTTTAACATAAATTC
EST: ATTCTTCTTCTTGCGAACTCGCTGAAGTCTGAAAGATG-AG GCAAGTGATAGGTTTAACATAAATTCTC
genomic: ATTCTTCTTCTTGCGAACTCGCTGAAGTCTGAAAGATGCAGgtttgtctct ... ttttgtgcagGCAAGTGATAGGTTTAACATAAATTCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATTCTTCTTCTTGCGAACTCGCTGAAGTCTGAAAGATGCAGgtttgtctctctcgattcgaaaccctagttacttttttttgttcttatctctaattttatacaatttcttgacgattaagctaagcgtagctgaaatctgggaacaatttgctttagttcttgtaaaggttaggtttttaagcagcagatagttatgtaatctcacttttttgtttttgtgcag
- - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - AAGATG