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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAGCAAGAACTTCAAGATATGATCACTGAGATCGACTCCGATGGCAACGGCACCATCGAATTTTCGGAGTTTCTCAACCTCATGGCTAACCAACTCCAGgttcaattctaaaatgttacatcaatgaagcatatttgtttttaacatatattgattgttttttttttgtttttttgtggttatag

Basic information

species Arabidopsis thaliana
transcript AT3G22930.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G22930.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: PP1S58_258V6.1 (Physcomitrella patens), 5'ss of exon 3
CGAGCAAGAACTTCAAGATATGATCACTGAGATCGACTCCGATGGCAACGGCACCATCGAATTTTCGGAGTTTCTCAACCTCATGGCTAACCAACTCCAGgttcaattcta--aaatgttacatcaatgaagcatatttgtttttaa--catatattgattgttttttttttgtttttttgtggttatag----------
||||  |||  | || || ||||||| |||| | ||  ||||||| |||||||| ||||| ||| | |||||||| |||||||||||     || |  ||||     |     | |  ||  |   |||   |  |    || | |   ||  |||      | |  |     |  |        | ||           
CGAGGCAGAGTTGCAGGACATGATCAATGAGGTTGATGCCGATGGAAACGGCACTATCGATTTTCCCGAGTTTCTAAACCTCATGGCCCGGAAAATGAAGgtatgtcttctccagacattgaaatgatgtttctcaccacttctaagttcaagtatcttcgatgtaatacaaatcatcacactagtttactttttgtgca

upper sequence: AT3G22930.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: EFJ32870 (Selaginella moellendorffii), 5'ss of exon 2
CGAGCAAGAACTTCAAGATATGATCACTGAGATCGACTCCGATGGCAACGGCACCATCGAATTTTCGGAGTTTCTCAACCTCATGGCTAACCAACTCCAGgttcaattctaaaatgttacatcaatga------agcatatttgtttttaacatatattgattgttttttttttgtttttttgtggttatag----------------------
 ||||| || || |  || ||||||   ||| ||||    |||||||||||||||||||| ||   |||||||||||| |||||||| |   |  |  |||| | | |||    |    | |    ||      |||||  || ||| |    | | | |  |    |  |           ||| ||  |                       
GGAGCAGGAGCTCCGGGAGATGATCGAAGAGGTCGATGTGGATGGCAACGGCACCATCGATTTCCAGGAGTTTCTCAATCTCATGGCGAGGAAGATGAAGgtaccaatcttttctacctccttctcgatgtgatagcatgcttttttatgcattctctcgcctcgcgtgctggaaagaacaagtgttttaaaagttctcttcctatcattccag

upper sequence: AT3G22930.1 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: EFJ14591 (Selaginella moellendorffii), 5'ss of exon 2
CGAGCAAGAACTTCAAGATATGATCACTGAGATCGACTCCGATGGCAACGGCACCATCGAATTTTCGGAGTTTCTCAACCTCATGGCTAACCAACTCCAGgttcaattctaaaatgttacatcaatga------agcatatttgtttttaacatatattgattgttttttttttgtttttttgtggttatag----------------------
 |||   || || |  || ||||||   ||| ||||    |||||||||||||||||||| ||   |||||||||||| |||||||| |   |  |  |||| | | |||    |    | ||   ||      |||||  || ||| |    | | | |  |    |  |           ||| ||  |                       
GGAGGCGGAGCTCCGGGAGATGATCGACGAGGTCGATGTGGATGGCAACGGCACCATCGATTTCCAGGAGTTTCTCAATCTCATGGCGAGGAAGATGAAGgtaccaatcttttctacctcctcctcgatgtgatagcatgcttttttatgcattctctcgcctcgcgtgctggaaagaacaagtgttttaaaagttctcttcctatcactccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|222357063|gb|GH718949.1|GH718949
EST:     ACCATCGAATTTTCGGAGTTTCTCAACCTCATGGCTAACCAACTCCAG                         GAAACTGATGCAGATGAAGAGCTGAAAGAAGCATTCAAAGTGTTTGACAAA
genomic: ACCATCGAATTTTCGGAGTTTCTCAACCTCATGGCTAACCAACTCCAGgttcaattct ... gtggttatagGAAACTGATGCAGATGAAGAGCTGAAAGAAGCATTCAAAGTGTTTGACAAA