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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTTCTCGCTATTGACGATGAACAAAAAGCACGTATCGGCGAGTCTACACGTGTCGCTCTTTTCAATTCCGATGGTAACCCCGTCGCTATCCTCAGCGAgtaagtccttcttcaacatactcagattcaaattcagatcatagattgttggagaagacgaaaactgagatttgaatttgattttgaacttatctctctt...

Basic information

species Arabidopsis thaliana
transcript AT3G22890.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116447940|gb|EG490532.1|EG490532
EST:     CGTGTCGCTCTTTTCAATTCCGATGGTAACCCCGTCGCTATCCTCAGCGA                         TATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAGCTAGAACATGGGG
genomic: CGTGTCGCTCTTTTCAATTCCGATGGTAACCCCGTCGCTATCCTCAGCGAgtaagtcctt ... gtttgatcagTATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAGCTAGAACATGGGG
EST: gi|116411132|gb|EG453724.1|EG453724
EST:     CGTGTCGCTCTTTTCAATTCCGATGGTAACCCCGTCGCTATCCTCAGCGA                         TATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAGCTAGAACATGGGG
genomic: CGTGTCGCTCTTTTCAATTCCGATGGTAACCCCGTCGCTATCCTCAGCGAgtaagtcctt ... gtttgatcagTATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAGCTAGAACATGGGG
EST: gi|116429384|gb|EG471976.1|EG471976
EST:     CGTGTCGCTCTTTTCAATTCCGATGGTAACCCCGTCGCTATCCTCAGCGA                         TATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAGCTAGAACATGGGG
genomic: CGTGTCGCTCTTTTCAATTCCGATGGTAACCCCGTCGCTATCCTCAGCGAgtaagtcctt ... gtttgatcagTATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAGCTAGAACATGGGG
EST: gi|125282320|gb|EL296405.1|EL296405
EST:     CCGATGGTAACCCCGTCGCTATCCTCAGCGA                         TATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAGCTAGAACNTGGGG
genomic: CCGATGGTAACCCCGTCGCTATCCTCAGCGAgtaagtcctt ... gtttgatcagTATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAGCTAGAACATGGGG
EST: gi|116447941|gb|EG490533.1|EG490533
EST:     CGTGTCGCTCTTTTCAATTCCGATGGTAACCCCGTCGCTATCCTCAGCGA                         TATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAGCTAGAACATGGGG
genomic: CGTGTCGCTCTTTTCAATTCCGATGGTAACCCCGTCGCTATCCTCAGCGAgtaagtcctt ... gtttgatcagTATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAGCTAGAACATGGGG
EST: gi|116429406|gb|EG471998.1|EG471998
EST:     CGTGTCGCTCTTTTCAATTCCGATGGTAACCCCGTCGCTATCCTCAGCGA                         TATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAGCTAGAACATGGGG
genomic: CGTGTCGCTCTTTTCAATTCCGATGGTAACCCCGTCGCTATCCTCAGCGAgtaagtcctt ... gtttgatcagTATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAGCTAGAACATGGGG
EST: gi|301501831|gb|HO207371.1|HO207371
EST:     CCGTCGCTATCCTCAGCGA                         TATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAGCTAGAACATGGGG
genomic: CCGTCGCTATCCTCAGCGAgtaagtcctt ... gtttgatcagTATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAGCTAGAACATGGGG
EST: gi|301501053|gb|HO206593.1|HO206593
EST:     CGTGTCGCTCTTTTCAATTCCGATGGTAACCCCGTCGCTATCCTCAGCGA                         TATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAGCTAGAACATGGGG
genomic: CGTGTCGCTCTTTTCAATTCCGATGGTAACCCCGTCGCTATCCTCAGCGAgtaagtcctt ... gtttgatcagTATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAGCTAGAACATGGGG
EST: gi|125087765|gb|EL146777.1|EL146777
EST:     CTTTTCAATTCCGATGGTAACCCCGTCGCTATCCTCAGCGA                         TATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAGCTAGAACATGGGG
genomic: CTTTTCAATTCCGATGGTAACCCCGTCGCTATCCTCAGCGAgtaagtcctt ... gtttgatcagTATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAGCTAGAACATGGGG
EST: gi|116420529|gb|EG463121.1|EG463121
EST:     CGTGTCGCTCTTTTCAATTCCGATGGTAACCCCGTCGCTATCCTCAGCGA                         TATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAGCTAGAACATGGGG
genomic: CGTGTCGCTCTTTTCAATTCCGATGGTAACCCCGTCGCTATCCTCAGCGAgtaagtcctt ... gtttgatcagTATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAGCTAGAACATGGGG
EST: gi|124877827|gb|EH957264.1|EH957264
EST:     CGTGTCGCTCTTTTCAATTCCGATGGTAACCCCGTCGCTATCCTCAGCGA                         TATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAG
genomic: CGTGTCGCTCTTTTCAATTCCGATGGTAACCCCGTCGCTATCCTCAGCGAgtaagtcctt ... gtttgatcagTATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAG
EST: gi|116464929|gb|EG507521.1|EG507521
EST:     CGCGTCGCTCTTTTCAATTCCGATGGTAACCCCGTCGCTATCCTCAGCGA                         TATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAGCTAGAACATGGGG
genomic: CGTGTCGCTCTTTTCAATTCCGATGGTAACCCCGTCGCTATCCTCAGCGAgtaagtcctt ... gtttgatcagTATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAGCTAGAACATGGGG
EST: gi|116453692|gb|EG496284.1|EG496284
EST:     CGTGTCGCTCTTTTCAATTCCGATGGTAACCCCGTCGCTATCCTCAGCGA                         TATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAGCTAGAACATGGGG
genomic: CGTGTCGCTCTTTTCAATTCCGATGGTAACCCCGTCGCTATCCTCAGCGAgtaagtcctt ... gtttgatcagTATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAGCTAGAACATGGGG
EST: gi|125315335|gb|EL329420.1|EL329420
EST:     CGTGTCGCTCTTTTCAATTCCGATGGTAACCCCGTCGCTATCCTCAGCGA                         TATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAGCTAGAACATGGGG
genomic: CGTGTCGCTCTTTTCAATTCCGATGGTAACCCCGTCGCTATCCTCAGCGAgtaagtcctt ... gtttgatcagTATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAGCTAGAACATGGGG
EST: gi|125323153|gb|EL337235.1|EL337235
EST:     GTGTCGCTCTTTTCAATTCCGATGGTAACCCCGTCGCTATCCTCAGCGA                         TATTGAGATTTATAAGCATCCAAAGG
genomic: GTGTCGCTCTTTTCAATTCCGATGGTAACCCCGTCGCTATCCTCAGCGAgtaagtcctt ... gtttgatcagTATTGAGATTTATAAGCATCCAAAGG
EST: gi|125198324|gb|EL213278.1|EL213278
EST:     CGATGGTAACCCCGTCGCTATCCTCAGCGA                         TATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAGCTAGAACATGGGG
genomic: CGATGGTAACCCCGTCGCTATCCTCAGCGAgtaagtcctt ... gtttgatcagTATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAGCTAGAACATGGGG
EST: gi|124969882|gb|EL043750.1|EL043750
EST:     CCGATGGTAACCCCGTCGCTATCCTCAGCGA                         TATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAGCTAGAACATGGGG
genomic: CCGATGGTAACCCCGTCGCTATCCTCAGCGAgtaagtcctt ... gtttgatcagTATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAGCTAGAACATGGGG
EST: gi|125307997|gb|EL322082.1|EL322082
EST:     CGATGGTAACCCCGTCGCTATCCTCAGCGA                         TATTGAGATTTATAAGCAT
genomic: CGATGGTAACCCCGTCGCTATCCTCAGCGAgtaagtcctt ... gtttgatcagTATTGAGATTTATAAGCAT
EST: gi|125091032|gb|EL148855.1|EL148855
EST:     ATTCCGATGGTAACCCCGTCGCTATCCTCAGCGA                         TATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAGCTAGAACATGGGG
genomic: ATTCCGATGGTAACCCCGTCGCTATCCTCAGCGAgtaagtcctt ... gtttgatcagTATTGAGATTTATAAGCATCCAAAGGAAGAAAGGATAGCTAGAACATGGGG
EST: gi|125303650|gb|EL317735.1|EL317735
EST:     CGTGTCGCTCTTTTCAATTCCGATGGTAACCCCGTCGCTATCCTCAGCGA                         TATTGAGATTTATAAGCATCCAAA
genomic: CGTGTCGCTCTTTTCAATTCCGATGGTAACCCCGTCGCTATCCTCAGCGAgtaagtcctt ... gtttgatcagTATTGAGATTTATAAGCATCCAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TTGTTCTCGCTATTGACGATGAACAAAAAGCACGTATCGGCGAGTCTACACGTGTCGCTCTTTTCAATTCCGATGGTAACCCCGTCGCTATCCTCAGCGAgtaagtccttcttcaacatactcagattcaaattcagatcatagattgttggagaagacgaaaactgagatttgaatttgattttgaacttatctctctt

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccttcttc
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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tatctctc