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ATAGAGGCAATGTAGATGTGATTTTTGCTGGAAAATGGACAAATCCCAGAAGAATCCTACTTCCCAGATCGGAACTTCAACTCCCAAATCCAAATTCGAGgtttttttccttaatttcctcaaagttcactcctttcgttctttacaagctctgcattttttttttgaagaagatagtgttctgttttctgggttttgct...
species | Arabidopsis thaliana |
transcript | AT3G22780.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGATCGGAACTTCAACTCCCAAATCCAAATTCGAG GATTCTCCAGTGTTCAACTACATAAGCAACCTCTCTCCAATTGAGTCGGTCEST: gi|86060675|gb|DR356432.1|DR356432
genomic: AGATCGGAACTTCAACTCCCAAATCCAAATTCGAGgtttttttcc ... tacaatgtagGATTCTCCAGTGTTCAACTACATAAGCAACCTCTCTCCAATTGAGTCGGTC
EST: AGAATCCTACTTCCCAGATCGGAACTTCAACTCCCAAATCCAAATTCGAG GATTCTCCAGTGTTCAACTACATAAGCAACCTCTCTCCAATTGAGTCGGTC
genomic: AGAATCCTACTTCCCAGATCGGAACTTCAACTCCCAAATCCAAATTCGAGgtttttttcc ... tacaatgtagGATTCTCCAGTGTTCAACTACATAAGCAACCTCTCTCCAATTGAGTCGGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAGAGGCAATGTAGATGTGATTTTTGCTGGAAAATGGACAAATCCCAGAAGAATCCTACTTCCCAGATCGGAACTTCAACTCCCAAATCCAAATTCGAGgtttttttccttaatttcctcaaagttcactcctttcgttctttacaagctctgcattttttttttgaagaagatagtgttctgttttctgggttttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcctttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaagaag