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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCATATGAAGTACGATCCTCAGTGTCAATTCCCGCTTTGTCATCTCGGATCTGATGATGATCCTTCCGTTTCTCTTCCCAAATCTCTCTCACAAATTCAGgtgttttgttattattattacttgtgcttcttcaattgcttgtttctgcgtataaattctgggaagattttgacgaatgttgagaaacacaagtacttaggtttattgtagagaagcgaaatgctcatgttaacgaaatttgttatatgatttggagttag

Basic information

species Arabidopsis thaliana
transcript AT3G19720.3
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125026946|gb|EL099215.1|EL099215
EST:     GATCCTTCCGTTTCTCTTCCCAAATCTCTCTCACAAATTCAG                         GCATATATTGAGGCTGAGAACA
genomic: GATCCTTCCGTTTCTCTTCCCAAATCTCTCTCACAAATTCAGgtgttttgtt ... ttggagttagGCATATATTGAGGCTGAGAACA
EST: gi|116411659|gb|EG454251.1|EG454251
EST:     CTGATGATGATCCTTCCGTTTCTCTTCCCAAATCTCTCTCACAAATTCAG                         GCATATATTGAGGCTGAGAACATGAGGCTGGAGCAAGAGCCATGTAGCCCA
genomic: CTGATGATGATCCTTCCGTTTCTCTTCCCAAATCTCTCTCACAAATTCAGgtgttttgtt ... ttggagttagGCATATATTGAGGCTGAGAACATGAGGCTGGAGCAAGAGCCATGTAGCCCA