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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTCATTTCTGCTCTGTTGTGCTATCGTAGCGTCGCGCTCCTTTAAACGCGACGGACGCAGCCTTCTCTGTTCATCGTTTCGCCGGAAGTTTTCTTCAGgtatgatattttgagaccgtcgttgatatttttattcagtttccatagagaaaaaaaaacaattcctgagttctggatcgaggatcgatttcgataatac...

Basic information

species Arabidopsis thaliana
transcript AT3G18520.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19878233|gb|AU239064.1|AU239064
EST:     CGACGGACGCAGCCTTCTCTGTTCATCGTTTCGCCGGAAGTTTTCTTCAG                         CGGAGATTTATTTTCAGCTGGTTAGTAGTTTTGAGTGACTACTGAGGTAAC
genomic: CGACGGACGCAGCCTTCTCTGTTCATCGTTTCGCCGGAAGTTTTCTTCAGgtatgatatt ... tttggcacagCGGAGATTTATTTTCAGCTGGTTAGTAGTTTTGAGTGACTACTGAGGTAAC
EST: gi|86044709|gb|DR340464.1|DR340464
EST:     CGACGGACGCAGCCTTCTCTGTTCATCGTTTCGCCGGAAGTTTTCTTCAG                         CGGAGATTTATTTTCAGCTGGTTAGTAGTTTTGAGTGACTACTGAGGTAAC
genomic: CGACGGACGCAGCCTTCTCTGTTCATCGTTTCGCCGGAAGTTTTCTTCAGgtatgatatt ... tttggcacagCGGAGATTTATTTTCAGCTGGTTAGTAGTTTTGAGTGACTACTGAGGTAAC