1 5' 3' |
GAGAACTTGGTGCCCTTGAGAGCGTACTATTACAGTGGAGACGAGAAGCTGCTTGTCTATGACTTCATGCCTATGGGAAGCTTATCAGCTCTCTTACACGgtgagaactacccctctctttctttctcagcgaaaaatttgatttttattgttaatagttctctgctgaatcttaagtttggcataattagtaatggatt...
species | Arabidopsis thaliana |
transcript | AT3G17840.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CTTGTCTATGACTTTCATGCCTATGGGAAGCTTATCAGCTCTCTTACACG GAAACAAAGGTGCAGGCCGGCCTCCATTGAACTGGGAAGEST: gi|164221791|gb|ES058705.1|ES058705
genomic: CTTGTCTATGAC-TTCATGCCTATGGGAAGCTTATCAGCTCTCTTACACGgtgagaacta ... tatgttacagGAAACAAAGGTGCAGGCCGGCCTCCATTGAACTGGGAAG
EST: GGGAAGCTTATCAGCTCNCTTACACG GAAACAAAGGTGCAGGCCGGCCTCCATTGAACTGGGAAGTCAGATCAGGCA
genomic: GGGAAGCTTATCAGCTCTCTTACACGgtgagaacta ... tatgttacagGAAACAAAGGTGCAGGCCGGCCTCCATTGAACTGGGAAGTCAGATCAGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGAACTTGGTGCCCTTGAGAGCGTACTATTACAGTGGAGACGAGAAGCTGCTTGTCTATGACTTCATGCCTATGGGAAGCTTATCAGCTCTCTTACACGgtgagaactacccctctctttctttctcagcgaaaaatttgatttttattgttaatagttctctgctgaatcttaagtttggcataattagtaatggatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctctct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tctttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcgaaaaa