1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
TCAAGAAGGAAACAGAAGACAAATCTTTCCACTGTTTTAATGGCAATCACTTCTCTCCTTCCAACAAAACCACTTCTGTTCCTCACATCTCACAGAAAAGgtataatctccttttttttccttcactgttattttttcttactgctttgacagaggatattctcttgaacattagggacccatcttctgcaatctgtgtt...
species | Arabidopsis thaliana |
transcript | AT3G16500.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TTCTCTCCTTCCAACAAAACCACTTCTGTTCCTCACATCTCACAGAAAAG AACTGCTCCTGGTCCAGTGGTGGGTTGGCCTCCGGTTCGTTCGTTCAGAAAEST: gi|86048600|gb|DR344355.1|DR344355
genomic: TTCTCTCCTTCCAACAAAACCACTTCTGTTCCTCACATCTCACAGAAAAGgtataatctc ... tggttcaaagAACTGCTCCTGGTCCAGTGGTGGGTTGGCCTCCGGTTCGTTCGTTCAGAAA
EST: TTCTCTCCTTCCAACAAAACCACTTCTGTTCCTCACATCTCACAGAAAAG AACTGCTCCTGGTCCAGTGGTGGGTTGGCCTCCGGTTCGTTCGTTCAGAEST: gi|86048601|gb|DR344356.1|DR344356
genomic: TTCTCTCCTTCCAACAAAACCACTTCTGTTCCTCACATCTCACAGAAAAGgtataatctc ... tggttcaaagAACTGCTCCTGGTCCAGTGGTGGGTTGGCCTCCGGTTCGTTCGTTCAGA
EST: TTCTCTCCTTCCAACAAAACCACTTCTGTTCCTCACATCTCACAGAAAAG AACTGCTCCTGGTCCAGTGGTGGGTTGGC-TCCGGTTCGTTCGTTCAGAAAEST: gi|86048608|gb|DR344363.1|DR344363
genomic: TTCTCTCCTTCCAACAAAACCACTTCTGTTCCTCACATCTCACAGAAAAGgtataatctc ... tggttcaaagAACTGCTCCTGGTCCAGTGGTGGGTTGGCCTCCGGTTCGTTCGTTCAGAAA
EST: TTCTCTCCTTCCAACAAAACCACTTCTGTTCCTCACATCTCACAGAAAAG AACTGCTCCTGGTCCAGTGGTGGGTTGGCCTCCGGTTTCGTTCGTTCAGAAEST: gi|86048613|gb|DR344368.1|DR344368
genomic: TTCTCTCCTTCCAACAAAACCACTTCTGTTCCTCACATCTCACAGAAAAGgtataatctc ... tggttcaaagAACTGCTCCTGGTCCAGTGGTGGGTTGGCCTCCGGTT-CGTTCGTTCAGAA
EST: TTCTCTCCTTCCAACAAAACCACTTCTGTTCCTCACATCTCACAGAAAAG AACTGCTCCTGGTCCAGTGGTGGGTTGGCCTCCGGTTSGTTCGTTCAGAAAEST: gi|86048607|gb|DR344362.1|DR344362
genomic: TTCTCTCCTTCCAACAAAACCACTTCTGTTCCTCACATCTCACAGAAAAGgtataatctc ... tggttcaaagAACTGCTCCTGGTCCAGTGGTGGGTTGGCCTCCGGTTCGTTCGTTCAGAAA
EST: TTCTCTCCTTCCAACAAAACCACTTCTGTTCCTCACATCTCACAGAAAAG AACTGCTCCTGGTCCAGTGGTGGGTTGGCCTCCGGTTCGTTCGTTCAGAAAEST: gi|86048598|gb|DR344353.1|DR344353
genomic: TTCTCTCCTTCCAACAAAACCACTTCTGTTCCTCACATCTCACAGAAAAGgtataatctc ... tggttcaaagAACTGCTCCTGGTCCAGTGGTGGGTTGGCCTCCGGTTCGTTCGTTCAGAAA
EST: TTCTCTCCTTCCAACAAAACCACTTCTGTTCCTCACATCTCACAGAAAAG AACTGCTCCTGGTCCAGTGGTGGGTTGGEST: gi|86048611|gb|DR344366.1|DR344366
genomic: TTCTCTCCTTCCAACAAAACCACTTCTGTTCCTCACATCTCACAGAAAAGgtataatctc ... tggttcaaagAACTGCTCCTGGTCCAGTGGTGGGTTGG
EST: TTCTCTCCTTCCAACAAAACCACTTCTGTTCCTCACATCTCACAGAAAAG AACTGCTCCTGGTCCAGTGGTGGGTTGGCCTCCGGTTCGTTCGTTCAGAAAEST: gi|86048612|gb|DR344367.1|DR344367
genomic: TTCTCTCCTTCCAACAAAACCACTTCTGTTCCTCACATCTCACAGAAAAGgtataatctc ... tggttcaaagAACTGCTCCTGGTCCAGTGGTGGGTTGGCCTCCGGTTCGTTCGTTCAGAAA
EST: TTCTCTCCTTCCAACAAAACCACTTCTGTTCCTCACATCTCACAGAAAAG AACTGCTCCTGGTCCAGTGGTGGGTTGGC-TCCGGTTCGTTCGTTCAGAA-EST: gi|86048606|gb|DR344361.1|DR344361
genomic: TTCTCTCCTTCCAACAAAACCACTTCTGTTCCTCACATCTCACAGAAAAGgtataatctc ... tggttcaaagAACTGCTCCTGGTCCAGTGGTGGGTTGGCCTCCGGTTCGTTCGTTCAGAAA
EST: TTCTCTCCTTCCAACAAAACCACTTCTGTTCCTCACATCTCACAGAAAAG AACTGCTCCTGGTCCAGGTGGTGGGTTGGCCTCC
genomic: TTCTCTCCTTCCAACAAAACCACTTCTGTTCCTCACATCTCACAGAAAAGgtataatctc ... tggttcaaagAACTGCTCCTGGTCCAG-TGGTGGGTTGGCCTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAAGAAGGAAACAGAAGACAAATCTTTCCACTGTTTTAATGGCAATCACTTCTCTCCTTCCAACAAAACCACTTCTGTTCCTCACATCTCACAGAAAAGgtataatctccttttttttccttcactgttattttttcttactgctttgacagaggatattctcttgaacattagggacccatcttctgcaatctgtgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccttcact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agaggata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatcttc