1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
ACTTTGAAGAAATCTGCGTGATTTAGAGATGGCGGCTTCTTTATCGAGCAGACTTATAAAAGGAATCGCTAATCTCAAAGCTGTTCGTTCTAGCAGATTGgttagattctctcataacccttttactcaattttgatgtatctaatgtttgctcaataaagttttctcttttcccatcttgaatcacttaaaaattgctc...
species | Arabidopsis thaliana |
transcript | AT3G15660.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CGTTCTAGCAGATTG ACGTCTGCATCAGTCTACCAAAATGGGATGATGAGATTTTCCTCAACAGTGEST: gi|19874734|gb|AU235565.1|AU235565
genomic: CGTTCTAGCAGATTGgttagattct ... ttgtttgcagACGTCTGCATCAGTCTACCAAAATGGGATGATGAGATTTTCCTCAACAGTG
EST: GACTTATAAAAGGAATCGCTAATCTCAAAGCTGTTCGTTCTAGCAGATTG ACGTCTGCATCAGTCTACCAAAATGGGATGATGAGATTTTCCTCAACAGTG
genomic: GACTTATAAAAGGAATCGCTAATCTCAAAGCTGTTCGTTCTAGCAGATTGgttagattct ... ttgtttgcagACGTCTGCATCAGTCTACCAAAATGGGATGATGAGATTTTCCTCAACAGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTTGAAGAAATCTGCGTGATTTAGAGATGGCGGCTTCTTTATCGAGCAGACTTATAAAAGGAATCGCTAATCTCAAAGCTGTTCGTTCTAGCAGATTGgttagattctctcataacccttttactcaattttgatgtatctaatgtttgctcaataaagttttctcttttcccatcttgaatcacttaaaaattgctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT