1 5' 3' | 2 5' 3' |
GATGGTGTGCCTTATTTGAGGAAGATGGATCTTGGTTCGAGCCAAGGCTATGATGATCTAGCCTTTGCTCTTGATAAGCTCTTCGGTTTCCGTGGCATCGgttagtaacaattatgttctcttcccataaaagtagagtggtaattagatcatgtggaaaacaactaattatatatagtttacaagacgtccgattaaga...
species | Arabidopsis thaliana |
transcript | AT3G15540.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGATGATCTAGCCTTTGCTCTTGATAAGCTCTTCGGTTTCCGTGGCATCG GTGTGGCCTTAGAAAGATGGTGACAACTGCGAATACGTTEST: gi|19876757|gb|AU237588.1|AU237588
genomic: TGATGATCTAGCCTTTGCTCTTGATAAGCTCTTCGGTTTCCGTGGCATCGgttagtaaca ... atttgtgcagGTGTGGCCTT-GAAAGATGGTGACAACTGCGAATACGTT
EST: TGATGATCTAGCCTTTGCTCTTGATAAGCTCTTCGGTTTCCGTGGCATCG GTGTGGCCTTGAAAGATGGTGACNACTGCGAATACGTTACCATATACNAAG
genomic: TGATGATCTAGCCTTTGCTCTTGATAAGCTCTTCGGTTTCCGTGGCATCGgttagtaaca ... atttgtgcagGTGTGGCCTTGAAAGATGGTGACAACTGCGAATACGTTACCATATACGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGGTGTGCCTTATTTGAGGAAGATGGATCTTGGTTCGAGCCAAGGCTATGATGATCTAGCCTTTGCTCTTGATAAGCTCTTCGGTTTCCGTGGCATCGgttagtaacaattatgttctcttcccataaaagtagagtggtaattagatcatgtggaaaacaactaattatatatagtttacaagacgtccgattaaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tctcttcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaagtaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaacaa