1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
ATAAGAAGGAAGATGCTGAGAACTCTAAACCTGCGTATGCGTCTGTATTCAGGAATAAAGAGAAGGTTCTCGTTACTTGTTCCCGTCGGATCAATTTCAGgtgaatggtgttgaaatttacattgggtttgattcggtttaatggttatgaatcatggagtaactttgttaattcgttggaag
species | Arabidopsis thaliana |
transcript | AT3G15460.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGGAATAAAGAGAAGGTTCTCGTTACTTGTTCCCGTCGGATCAATTTCAG GTATCGACATTTGATGTTGAACATGGTGTCACTTTTACCTCACTGTAAGAAEST: gi|86031712|gb|DR327465.1|DR327465
genomic: AGGAATAAAGAGAAGGTTCTCGTTACTTGTTCCCGTCGGATCAATTTCAGgtgaatggtg ... tcgttggaagGTATCGACATTTGATGTTGAACATGGTGTCACTTTTACCTCACTGTAAGAA
EST: AGGAATAAAGAGAAGGTTCTCGTTACTTGTTCCCGTCGGATCAATTTCAG GTATCGACATTTGATGTTGAACATGGTGTCACTTTTACCTCACTGTAAGAAEST: gi|86031710|gb|DR327463.1|DR327463
genomic: AGGAATAAAGAGAAGGTTCTCGTTACTTGTTCCCGTCGGATCAATTTCAGgtgaatggtg ... tcgttggaagGTATCGACATTTGATGTTGAACATGGTGTCACTTTTACCTCACTGTAAGAA
EST: AGGAATAAAGAGAAGGTTCTCGTTACTTGTTCCCGTCGGATCAATTTCAG GTATCGACATTTGATGTTGAACATGGTGTCACTTTTACCTCACTGTAAGAAEST: gi|86031709|gb|DR327462.1|DR327462
genomic: AGGAATAAAGAGAAGGTTCTCGTTACTTGTTCCCGTCGGATCAATTTCAGgtgaatggtg ... tcgttggaagGTATCGACATTTGATGTTGAACATGGTGTCACTTTTACCTCACTGTAAGAA
EST: AGGAATAAAGAGAAGGTTCTCGTTACTTGTTCCCGTCGGATCAATTTCAG GTATCGACATTTGATGTTGAACATGGTGTCACTTTTACCTCACTGTAAGAAEST: gi|86031714|gb|DR327467.1|DR327467
genomic: AGGAATAAAGAGAAGGTTCTCGTTACTTGTTCCCGTCGGATCAATTTCAGgtgaatggtg ... tcgttggaagGTATCGACATTTGATGTTGAACATGGTGTCACTTTTACCTCACTGTAAGAA
EST: AGGAATAAAGAGAAGGTTCTCGTTACTTGTTCCCGTCGGATCAATTTCAG GTATCGACATTTGATGTTGAACATGGTGTCACTTTTACCTCACTGTAAGAAEST: gi|86031711|gb|DR327464.1|DR327464
genomic: AGGAATAAAGAGAAGGTTCTCGTTACTTGTTCCCGTCGGATCAATTTCAGgtgaatggtg ... tcgttggaagGTATCGACATTTGATGTTGAACATGGTGTCACTTTTACCTCACTGTAAGAA
EST: AGGAATAAAGAGAAGGTTCTCGTTACTTGTTCCCGTCGGATCAATTTCAG GTATCGACATTTGATGTTGAACATGGTGTCACTTTTACCTCACTGTAAGAAEST: gi|86031708|gb|DR327461.1|DR327461
genomic: AGGAATAAAGAGAAGGTTCTCGTTACTTGTTCCCGTCGGATCAATTTCAGgtgaatggtg ... tcgttggaagGTATCGACATTTGATGTTGAACATGGTGTCACTTTTACCTCACTGTAAGAA
EST: AGGAATAAAGAGAAGGTTCTCGTTACTTGTTCCCGTCGGATCAATTTCAG GTATCGACATTTGATGTTGAACATGGTGTCACTTTTACCTCACTGTAAGAA
genomic: AGGAATAAAGAGAAGGTTCTCGTTACTTGTTCCCGTCGGATCAATTTCAGgtgaatggtg ... tcgttggaagGTATCGACATTTGATGTTGAACATGGTGTCACTTTTACCTCACTGTAAGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATAAGAAGGAAGATGCTGAGAACTCTAAACCTGCGTATGCGTCTGTATTCAGGAATAAAGAGAAGGTTCTCGTTACTTGTTCCCGTCGGATCAATTTCAGgtgaatggtgttgaaatttacattgggtttgattcggtttaatggttatgaatcatggagtaactttgttaattcgttggaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA