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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAAGCTTTAGGGATGGTGGCTCTCCACGACGCCCTGAGAACTGTTTGTCTCAACACCGACTGGACTTACTCTGTCTTCTGGTCCATCCGTCCCCGTCCgtacgtatctctctcctcagctcctctcttttttttttattgacatgatctatctatctctcctcaaaacgatgtcttttttgttcttcag

Basic information

species Arabidopsis thaliana
transcript AT3G15240.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT3G15240.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: LOC_Os11g25920.1 (Oryza sativa), 5'ss of exon 1
AAGAAGCTTTAGGGATGGTGGCTCTCCACGACGCCCTGAGAACTGTTTGTCTCAACACCGACTGGACTTACTCTGTCTTCTGGTCCATCCGTCCCCGTCCgtacgtatctctctcc-tcagctcctctctttttttt---ttattgacatgatctatctatctctcctcaaaacgatgtcttttttgttcttcag-
|||| ||    |||||| ||||||||||||| |||||  | |  || || |||||| |||||||||||||||| ||||||||| |||||||||| || ||||| || |  | ||   | |  | |   |  |  | |   || ||| |   | || || |||||  |||    |  | | | | | ||  |  |  
AAGAGGCCGCCGGGATGATGGCTCTCCACGAGGCCCTCCGCAACGTCTGCCTCAACTCCGACTGGACTTACTCCGTCTTCTGGACCATCCGTCCTCGCCCgtatgtgtaccacttaattaattaccacccctcctatgaatttttgcctcaaactctc-atctcatctcttctccctatatatat-gtcgtcgaag

upper sequence: AT3G15240.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA13G34980.1 (Glycine max), 5'ss of exon 1
AAGAAGCTTTAGGGATGGTGGCTCTCCACGACGCCCTGAGAACTGTTTGTCTCAACACCGACTGGACTTACTCTGTCTTCTGGTCCATCCGTCCCCGTCCgtacg---tatctctctc-----ctcagctcctctcttttttttttattgacatgatct---atctat---ctctcctcaaaacgatgtcttt-tttgttcttcag--
|||||||| | |||||| |||| || || || ||||| ||||  || ||||||||| | |||||||||||||||||||||||| |||| ||||| || ||||| |   |   |||||      |||   | |||||||| | | ||  || |   | ||   | | ||   ||||   |  |||   |||||| |   ||  |||   
AAGAAGCTGTTGGGATGATGGCCCTTCATGATGCCCTCAGAAGAGTCTGTCTCAACTCAGACTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCgtatgacatgcttctctttcattctcttattctctctttctgtctttctgtctctaacttcaaaccataacctcttacctcaactgggtctttgtccatttctcacag

upper sequence: AT3G15240.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA06G36190.1 (Glycine max), 5'ss of exon 1
AAGAAGCTTTAGGGATGGTGGCTCTCCACGACGCCCTGAGAACTGTTTGTCTCAACACCGACTGGACTTACTCTGTCTTCTGGTCCATCCGTCCCCGTCCgtacgtatctctctcctcagctcctctcttttttttttattgacatgatctatctatctctcctcaaaacgatgtcttttttgttcttcag-----------------------------
|||||||| | |||||| |||| || || || ||||| |||| ||| ||||||||| | || ||||||||||||||||||||| |||| ||||| || ||||| |  |||     |||  |||     ||| | | ||||    ||| |   |  |    |  |  |   | | | |||||| ||||                                 
AAGAAGCTGTTGGGATGATGGCCCTTCATGAGGCCCTCAGAAGTGTGTGTCTCAACTCAGATTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCgtatgcttcttctctctct-ctctgtattttgtatgttatgatgatgctactttcaatggtgttttatgaggtttttttttttttctcacctgggtcttctccattttattttcttgcag

upper sequence: AT3G15240.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA12G27400.1 (Glycine max), 5'ss of exon 1
AAGAAGCTTTAGGGATGGTGGCTCTCCACGACGCCCTGAGAACTGTTTGTCTCAACACCGACTGGACTTACTCTGTCTTCTGGTCCATCCGTCCCCGTCCgtacgtatctctctcctcagctcctctcttttttttttattgacatgatctatctatctctcctcaaaacgatgtctttt---ttgttcttcag----------------------------
|||||||| | |||||| |||| || || || ||||| |||| ||| ||||||||| | || ||||||||||||||||||||| |||| ||||| || ||||| |  ||||||||     |||      | ||| |   | |   || | ||| | |  || ||   || | ||| ||||    |||| |||                              
AAGAAGCTGTTGGGATGATGGCCCTTCATGAGGCCCTCAGAAGTGTGTGTCTCAACTCAGATTGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCgtatgcttctctctctctctctctctctctctttctgcgtggttgtg-tgtatatgtg-ctactttgaatggtgttttttgaggtgtttttctcaactgggtcttctccattttttttgcag

upper sequence: AT3G15240.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: GLYMA12G35490.1 (Glycine max), 5'ss of exon 1
AAGAAGCTTTAGGGATGGTGGCTCTCCACGACGCCCTGAGAACTGTTTGTCTCAACACCGACTGGACTTACTCTGTCTTCTGGTCCATCCGTCCCCGTCCgtacgtatctctctcctcagctcctctcttttttttttattgacatgatctatctatctctcctcaaaacgatgtcttttttgttc--ttcag------------------------------------------------------------------------------------------
|||||||| | |||||| |||| || || ||  |||| ||||  || ||||||||| | || ||||||||||||||||||||| |||| ||||| || ||||| |   || |||   |  ||| | | |||||  |   |  | ||     | |  | ||     | | | |     ||||    |  || ||                                                                                          
AAGAAGCTGTTGGGATGATGGCCCTTCATGAGACCCTCAGAAGAGTCTGTCTCAACTCAGAATGGACTTACTCTGTCTTCTGGACCATTCGTCCTCGCCCgtatg---ctatctatacttctcttttttttttaatccgtaaaaattgaagaccggtatcaggcaatacccacactcttttcaaccaattgagctatagtcctttggtctctctttctgtttcttaactctaacttcaaccaataacctcttacctcaactgggtcttgtccatttcatacag

upper sequence: AT3G15240.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: Vv19s0014g02320.t01 (Vitis vinifera), 5'ss of exon 1
AAGAAGCTTTAGGGATGGTGGCTCTCCACGACGCCCTGAGAACTGTTTGTCTCAACACCGACTGGACTTACTCTGTCTTCTGGTCCATCCGTCCCCGTCCgtacgtatctctctcctcagctcctctcttttttttttattgacat---gatctatct-atctctcctcaaaacgatgtcttttttgttcttcag
|||||||  | |||||| |||| || || |||||||| |||| ||| ||||||||| | ||||||||||||||||| |||||| |||||||||| || ||||| || || || ||  ||  |  ||| | | | | |   |||  |   | | |  || || | | ||||||  | | ||||   | || | |||
AAGAAGCAGTTGGGATGATGGCCCTTCATGACGCCCTTAGAAGTGTCTGTCTCAACTCAGACTGGACTTACTCTGTGTTCTGGACCATCCGTCCTCGCCCgtatgtctccctttctacactttttctatctatctgtctgtgattttttggttttcctgatattttctcaaacgggtatcttccat-ttttgcag

upper sequence: AT3G15240.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: EFJ05904 (Selaginella moellendorffii), 5'ss of exon 1
AAGAAGCTTTAGGGATGGTGGCTCTCCACGACGCCCTGAGAACTGTTTGTCTCAACACCGACTGGACTTACTCTGTCTTCTGGTCCATCCGTCCCCGTCCgtacgtatct-ctctcctcagctcctctcttttttttttattgacatgatctatctatctctcctcaaaacgatgtcttttttgttcttcag----------------------------------
  ||||   | |   |  |||| || ||||| || ||| | | ||| ||| ||| | | || ||||||||||||||||||||| ||||||||||||| ||||| | | |  ||| ||| |   || || | | | | | | |  |    ||  ||| ||||| |||       | ||  |    | || |                                    
GGGAAGTGATGGCAGTCATGGCGCTGCACGAAGCGCTGCGGAATGTGTGTATCAGCTCAGATTGGACTTACTCTGTCTTCTGGACCATCCGTCCCCGACCgtaagaagcagctcaccttaagccccct-tctctctctcactctctctctcgctctctctcttctcctcgttgtttcactgcattgctacgttgcttgctctgattcatctggctttcatctccag

upper sequence: AT3G15240.2 (Arabidopsis thaliana), 5'ss of exon 1
lower sequence: EFJ26828 (Selaginella moellendorffii), 5'ss of exon 1
AAGAAGCTTTAGGGATGGTGGCTCTCCACGACGCCCTGAGAACTGTTTGTCTCAACACCGACTGGACTTACTCTGTCTTCTGGTCCATCCGTCCCCGTCCgtacgtatct-ctctcctcagctcctctcttttttttttattgacatgatctatctatc-tctcctcaaaacgatgtcttttttgttct---tcag-----------------
  ||||   | |   |  |||| || ||||| || ||| | | ||| ||| ||| | | || ||||||||||||||||||||| ||||||||||||| ||||| |   |  ||| ||| |   || ||  | | | | | |     |  |||     |  | ||     |  | |   ||  ||| |||   |||                  
GGGAAGTGATGGCAGTCATGGCGCTGCACGAAGCGCTGCGGAATGTGTGTATCAGCTCAGATTGGACTTACTCTGTCTTCTGGACCATCCGTCCCCGACCgtaagaggcagctcgccttaagcccccttctctctctctctctctctcttctcctcgttgtttcactgcattgctacgttgcttgctctgattcatctggctttcatctccag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116418159|gb|EG460751.1|EG460751
EST:     CTCAACACCGACTGGACTTACTCTGTCTTCTGGTCCATCCGTCCCCGTCC                         GAGAGTTCGAGGCGGTGGCAACGGCTGCAAAGTTGGCG
genomic: CTCAACACCGACTGGACTTACTCTGTCTTCTGGTCCATCCGTCCCCGTCCgtacgtatct ... tgttcttcagGAGAGTTCGAGGCGGTGGCAACGGCTGCAAAGTTGGCG
EST: gi|116418155|gb|EG460747.1|EG460747
EST:     CTCAACACCGACTGGACTTACTCTGTCTTCTGGTCCATCCGTCCCCGTCC                         GAGAGTTCGAGGCGGTGGCAACGGCTGCAAAGTTGGCGA
genomic: CTCAACACCGACTGGACTTACTCTGTCTTCTGGTCCATCCGTCCCCGTCCgtacgtatct ... tgttcttcagGAGAGTTCGAGGCGGTGGCAACGGCTGCAAAGTTGGCGA
EST: gi|116418153|gb|EG460745.1|EG460745
EST:     CTCAACACCGACTGGACTTACTCTGTCTTCTGGTCCATCCGTCCCCGTCC                         GAGAGTTCGAGGCGGTGGCAACGGCTGCAAAGTTGGCG
genomic: CTCAACACCGACTGGACTTACTCTGTCTTCTGGTCCATCCGTCCCCGTCCgtacgtatct ... tgttcttcagGAGAGTTCGAGGCGGTGGCAACGGCTGCAAAGTTGGCG