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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTAAACACAAAACTATCTTCATCATCATCATCAAATCCCAGCTTTCTTCCAAGTGATCCTTCACTCTCTATACTGCGATTTACCGTTCTTCTGACTCTTGgtgagttctagatcgaatcctatcttccatccacatatttactgtttcaaaattggattgagtacaagtcaaattcatcgatctcgatctctgatatagttgccgagggaaaaaggagaaaccccctaacaaacattcccaccattttttttgttatttgcag

Basic information

species Arabidopsis thaliana
transcript AT3G13930.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|152038127|gb|BP808947.2|BP808947
EST:     AAGTGATCCTTCACTCTCTATACTGCGATTTACCGTTCTTCTGACTCTGG                         TTGCGAATTCGGATCGGCTGACGCAGCTCCGATGGCACAACAATGGCTTCT
genomic: AAGTGATCCTTCACTCTCTATACTGCGATTTACCGTTCTTCTGACTCTTGgtgagttcta ... ttatttgcagTTGCGAATTCGGATCGGCTGACGCAGCTCCGATTGCACAACAATGGCTTCT
EST: gi|152037856|gb|BP800329.2|BP800329
EST:     AAGTGATCCTTCACTCTCTATACTGCGATTTACCGTTCTTCTGACTCTTG                         TTGCGAATTCGGATCGGCTGACGCAGCTCCGATTGCACAACAATGGCTTCT
genomic: AAGTGATCCTTCACTCTCTATACTGCGATTTACCGTTCTTCTGACTCTTGgtgagttcta ... ttatttgcagTTGCGAATTCGGATCGGCTGACGCAGCTCCGATTGCACAACAATGGCTTCT
EST: gi|124918374|gb|EH992217.1|EH992217
EST:     TACTGCGATTTACCGTTCTTCTGACTCTTG                         TTGCGAATTCGGATCGGCTGACGCAGCTCCGATTGCACAACAATGGCTTCT
genomic: TACTGCGATTTACCGTTCTTCTGACTCTTGgtgagttcta ... ttatttgcagTTGCGAATTCGGATCGGCTGACGCAGCTCCGATTGCACAACAATGGCTTCT