1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TTCTTCTCCTTGTATTTATCTCTGAAGTCGTGCTTTTGATGTGAAAGGAGAAGAAGCTTGAAGACAGACAACTTTAAAGTTGACGAAACCAATGCTTCTGgtaatatcattttcttcacaattgtttgtgttcttcttcttcgtctggtctcactcctatagttttgtttaatcgttttcgtggcggtgaaattcatgag...
species | Arabidopsis thaliana |
transcript | AT3G13690.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GAAACCAAATGCTTCTG GTGAAGTTTTGAGCTTTTGAGCGATCTTTTGGGTCTTGCTCTTGCTCEST: gi|164214307|gb|ES056615.1|ES056615
genomic: GAAACC-AATGCTTCTGgtaatatcat ... tatattgcagGTGAAGTTTTGAGCTTTTGAGCGATCTTTTGGGTCTTGCTCTTGCTC
EST: GAAACCAATGCTTCTG GTGAAGTTTTGAGCTTTTGAGCGATCTTTTGGGTCTTGCTCTTGCTC
genomic: GAAACCAATGCTTCTGgtaatatcat ... tatattgcagGTGAAGTTTTGAGCTTTTGAGCGATCTTTTGGGTCTTGCTCTTGCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTCTTCTCCTTGTATTTATCTCTGAAGTCGTGCTTTTGATGTGAAAGGAGAAGAAGCTTGAAGACAGACAACTTTAAAGTTGACGAAACCAATGCTTCTGgtaatatcattttcttcacaattgtttgtgttcttcttcttcgtctggtctcactcctatagttttgtttaatcgttttcgtggcggtgaaattcatgag
- - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttcttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcactcc