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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTATAAGCCTCCCTCGAGATGTTCGCTTCACGAGCTTATCAACTTCAAGAATGCGGTCCAAATTTGTTTCAACCAATTATAGAAAAATCTCAATCCGGgtatggtttcattctaggtttctctttcgttgacaaagcatattagccgttgctttgacttttaagtcaagatgtgtttatgtgaactatgagattccta...

Basic information

species Arabidopsis thaliana
transcript AT3G11945.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125169334|gb|EL193428.1|EL193428
EST:     CGGTCCAAAATTTGTTTCAACCAATTATAGAAAAATCTCAATCCGG                         GCATGTTCTCAGGTTGGTGCTGCTGAGTCTGATGATCCAGTGCTGGATAGA
genomic: CGGTCC-AAATTTGTTTCAACCAATTATAGAAAAATCTCAATCCGGgtatggtttc ... atactaccagGCATGTTCTCAGGTTGGTGCTGCTGAGTCTGATGATCCAGTGCTGGATAGA
EST: gi|125022426|gb|EL094695.1|EL094695
EST:     TTCAACCAATTATAGAAAAATCTCAATCCGG                         GCATGTTCTCAGGTTGGTGCTGCTGAGTCTGATGATCCAGTGCTGGATAGA
genomic: TTCAACCAATTATAGAAAAATCTCAATCCGGgtatggtttc ... atactaccagGCATGTTCTCAGGTTGGTGCTGCTGAGTCTGATGATCCAGTGCTGGATAGA
EST: gi|86085149|gb|DR380908.1|DR380908
EST:     GAATGCGGTCCAAATTTGTTTCAMCCAATTATAGAAAAATCTCAATCCGG                         GCATGTTCTCAGGTTGGTGCTGCTGAGTCTGATGATCCAGTGCTGGATAGA
genomic: GAATGCGGTCCAAATTTGTTTCAACCAATTATAGAAAAATCTCAATCCGGgtatggtttc ... atactaccagGCATGTTCTCAGGTTGGTGCTGCTGAGTCTGATGATCCAGTGCTGGATAGA
EST: gi|124744157|gb|EH835319.1|EH835319
EST:     GAATGCGGTCCAAATTTGTTTCAACCAATTATAGAAAAATCTCAATCCGG                         GCATGTTCTCAGGTTGGTGCTGCTGAGTCTGATGAT
genomic: GAATGCGGTCCAAATTTGTTTCAACCAATTATAGAAAAATCTCAATCCGGgtatggtttc ... atactaccagGCATGTTCTCAGGTTGGTGCTGCTGAGTCTGATGAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTTTATAAGCCTCCCTCGAGATGTTCGCTTCACGAGCTTATCAACTTCAAGAATGCGGTCCAAATTTGTTTCAACCAATTATAGAAAAATCTCAATCCGGgtatggtttcattctaggtttctctttcgttgacaaagcatattagccgttgctttgacttttaagtcaagatgtgtttatgtgaactatgagattccta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctctttcg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - acaaagca